View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_28 (Length: 412)
Name: NF7723_low_28
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 49576364 - 49575967
Alignment:
| Q |
1 |
tactggaaacaataagagtcccatcgcggttaaaatcaacagcagtcaccggatcagaatgcgcaggtaaaaccttaagacacttcccagacttaacatc |
100 |
Q |
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| T |
49576364 |
tactggaaacaataagagtcccatcgcggttaaaatcaacagcagtcaccggatcagaatgcgcaggtaaaaccttaagacacttcccagacttaacatc |
49576265 |
T |
|
| Q |
101 |
ccaaaccctaacagtctcatcaaacgaaccagaaacaataacattactctgaggattaaaattaacacagaaaacgtaattcgtatgaccgtgaagagtc |
200 |
Q |
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| T |
49576264 |
ccaaaccctaacagtctcatcaaacgaaccagaaacaataacattactctgaggattaaaattaacacagaaaacgtaattcgtatgaccgtgaagagtc |
49576165 |
T |
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| Q |
201 |
ttcacaagcgaacccgtcggaacatcccataaacggatggttttgtcgtcggaggcggagacaaggtagcgggaatcggaggagaaagcgaggtcggaaa |
300 |
Q |
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| T |
49576164 |
ttcacaagcgaacccgtaggaacatcccataaacggatggttttgtcgtcggaggcggagacaaggtagcgggaatcggaggagaaagcgaggtcggaaa |
49576065 |
T |
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| Q |
301 |
cgccgtgctgatggccttcgtattgttgcataggagaaagagtgaggctgttggaatcggaatcggagttagtgaagccataagtgcggagggttttg |
398 |
Q |
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| T |
49576064 |
cgccgtgctgatggccttcgtattgttgcataggagaaagagtgaggctgttggaatcggaatcggagttagtgaagccataagtgcggagggttttg |
49575967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 32004961 - 32005013
Alignment:
| Q |
84 |
ttcccagacttaacatcccaaaccctaacagtctcatcaaacgaaccagaaac |
136 |
Q |
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| T |
32004961 |
ttcccagtcttcacttcccaaaccctaaccgtctcatcaaacgaacccgaaac |
32005013 |
T |
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