View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_30 (Length: 402)
Name: NF7723_low_30
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_30 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 34956400 - 34955999
Alignment:
| Q |
1 |
gagtcttattatggagatcgtgatacagataaccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcattttactttgaagtgtt |
100 |
Q |
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| T |
34956400 |
gagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcattttactttgaagtgtt |
34956301 |
T |
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| Q |
101 |
tatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatggagaatatattggcgt |
200 |
Q |
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| T |
34956300 |
tatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatggagaatatattggcgt |
34956201 |
T |
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| Q |
201 |
ctttcccttcagagtatcataagctagctttggaggataaattaaatgttacagaggattcaaaaagaccagcaccgtcatccgggggatgtagaattga |
300 |
Q |
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| T |
34956200 |
ctttcccttcagagtattataagctagctttggaggataaattaaatgttacagaggattcaaaaagaccagcaccgtcatccgggggatgtagaattga |
34956101 |
T |
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| Q |
301 |
aggatatgtacgtgtcaagaaggtaaactcgcatacggataaaatttaccttctaattctagtgtaatgtggaaaacttcttttgttgcttcctagtttt |
400 |
Q |
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| T |
34956100 |
aggatatgtacgtgtcaagaaggtaaactcgcatacggataaaatttaccttctaattctagtgtaatgtggaaaacttcttttgttgcttcctagtttt |
34956001 |
T |
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| Q |
401 |
ca |
402 |
Q |
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|| |
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| T |
34956000 |
ca |
34955999 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 31391257 - 31391327
Alignment:
| Q |
261 |
caaaaagaccagcaccgtcatccgggggatgtagaattgaaggatatgtacgtgtcaagaaggtaaactcg |
331 |
Q |
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| T |
31391257 |
caaaaagaccagcaccgtcaaccggtggatgtagagttgagggatatgtgcgtgtgaaaaaggtaaactcg |
31391327 |
T |
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