View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7723_low_32 (Length: 393)
Name: NF7723_low_32
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_32 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 4356003 - 4355623
Alignment:
| Q |
1 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4356003 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
4355904 |
T |
|
| Q |
101 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4355903 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagatgataagacattatgtatggcttgtaaaa |
4355804 |
T |
|
| Q |
201 |
agggctaggttttgcaaaataatgagaacaatctgagataacatgaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355803 |
agggctaggttttgcaaaataatgagaacaatctgagataacattaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagca |
4355704 |
T |
|
| Q |
301 |
aggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaattttttgatgtccat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
4355703 |
aggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaatttattgatgaccat |
4355623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 4674909 - 4675289
Alignment:
| Q |
1 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4674909 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
4675008 |
T |
|
| Q |
101 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4675009 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagatgataagacattatgtatggcttgtaaaa |
4675108 |
T |
|
| Q |
201 |
agggctaggttttgcaaaataatgagaacaatctgagataacatgaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4675109 |
agggctaggttttgcaaaataatgagaacaatctgagataacataaatggctttgttgtgaaacaagttcatgtcgaagttcatgtttcttccaccagca |
4675208 |
T |
|
| Q |
301 |
aggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaattttttgatgtccat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
4675209 |
aggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaatttattgatgaccat |
4675289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 20657152 - 20656984
Alignment:
| Q |
79 |
ccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataag |
178 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||| |||||| | | ||||| ||||||||||| ||||| |||||| |||||||||| |||||||||| |
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| T |
20657152 |
ccccagttgaatatgcccatgttacacataatatgacaaccttttacagcttcccttggcaacctaagcatagttgagattccattctctagattataag |
20657053 |
T |
|
| Q |
179 |
acattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
247 |
Q |
| |
|
||||||| |||||||| |||||||| |||| ||||||||| ||| || ||||||||||||| ||||| |
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|
| T |
20657052 |
acattatatatggcttataaaaaggcctagattttgcaaagtaagaagtgcaatctgagataaaatgaa |
20656984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 12036915 - 12036669
Alignment:
| Q |
1 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
100 |
Q |
| |
|
||||| ||| |||||||||| ||||| | ||||||| |||||||||||||||||| || || ||| | |||||||| || ||||||||||||| |
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|
| T |
12036915 |
tcttttaaaaaccaaacagtgaaaacaaaatttcttaatttcaccaaacaaatagaattattggaacttctctttttaccccagttgaatatgcccatgt |
12036816 |
T |
|
| Q |
101 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaa |
200 |
Q |
| |
|
|| ||| |||| |||||| | | ||||| |||| |||| | ||||| |||||| |||||||||| ||||||||||||||| | |||||||| ||||| |
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|
| T |
12036815 |
tacacataatatgacaaccttttacagcttcccttgacaacttaagcatggttgagattccattctctagattataagacattgtatatggcttataaaa |
12036716 |
T |
|
| Q |
201 |
agggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
247 |
Q |
| |
|
||| |||| ||||||||| ||| | |||||||||||||| ||||| |
|
|
| T |
12036715 |
aggactagattttgcaaagtaagaatcacaatctgagataaaatgaa |
12036669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 12035936 - 12036055
Alignment:
| Q |
128 |
cttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgaga |
227 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| || ||||||| ||||||||||||||||| ||| |||| |||||||| |||| ||||||||| ||| | |
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|
| T |
12035936 |
cttcccttggcaacctaagcatagttgagatttcattctctagattataagacattatatatagcttataaaaaggactagattttgcaaagtaagaggc |
12036035 |
T |
|
| Q |
228 |
acaatctgagataacatgaa |
247 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
12036036 |
gcaatctgagataaaatgaa |
12036055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 20655965 - 20656105
Alignment:
| Q |
79 |
ccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttc-cattctcgagattataa |
177 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||| |||||| | | |||| ||||||||| | ||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
20655965 |
ccccaattgaatatgcccatgttacacataatatgacaaccttttacaacttcccttggcaacttaagcatagttgagattctcattctctagattataa |
20656064 |
T |
|
| Q |
178 |
gacattatgtatggcttgtaaaaagggctaggttttgcaaa |
218 |
Q |
| |
|
||||||| |||||||| |||||||| |||| ||||||||| |
|
|
| T |
20656065 |
gacattacatatggcttataaaaaggactagattttgcaaa |
20656105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 362
Target Start/End: Complemental strand, 38249576 - 38249226
Alignment:
| Q |
12 |
ccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgttagtcatggta |
111 |
Q |
| |
|
||||| ||||||||| ||||| |||| ||||||||||||||| || | || | |||| | ||||||||||| ||||| |||||| | ||| || |
|
|
| T |
38249576 |
ccaaatagtaaaaacagacttacttaatttcaccaaacaaattgaactattgtaacttgtctttttaccccaattgaatattcccatggtgcacatatta |
38249477 |
T |
|
| Q |
112 |
tggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggtt |
211 |
Q |
| |
|
|| |||||| | || ||||| ||||||||| | ||||| |||||| |||| ||||| | ||||||||||||||| |||||||| ||||| || |||| || |
|
|
| T |
38249476 |
tgacaaccttttatagcttcccttggcaacttaagcatagttgagattccgttctctatattataagacattatatatggcttataaaatggactagatt |
38249377 |
T |
|
| Q |
212 |
ttgcaaaataatgagaacaatctgagataacatgaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaag-gaaaccat |
310 |
Q |
| |
|
||||||| ||| || | ||||||||||| ||||| | || ||||||||||| |||||| || |||||||||| |||||| || | |||||| |
|
|
| T |
38249376 |
ttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccacca-catgaaaaaccac |
38249278 |
T |
|
| Q |
311 |
tatccattgttttccacacaccttccttttcatgataaacacgacatgtata |
362 |
Q |
| |
|
| ||||||||| |||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
38249277 |
tttccattgttgtccacacaccttccttgctatggtaaacactacatgtata |
38249226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 38254547 - 38254458
Alignment:
| Q |
158 |
ttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
247 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||| |||| | |||||| ||| || ||||||||||||| ||||| |
|
|
| T |
38254547 |
ttccattctctagattataagacattatatatggcttataaaaaggactagatcttgcaatgtaagaagcgcaatctgagataaaatgaa |
38254458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 22177651 - 22177405
Alignment:
| Q |
1 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
100 |
Q |
| |
|
||||| ||| |||||||||| ||||| | ||| ||| |||||||||||||||||| | | || |||| | |||||||| || ||||||||||||| |
|
|
| T |
22177651 |
tcttttaaaaaccaaacagtgaaaacataatttattaatttcaccaaacaaatagaactatcggaacttgtctttttaccccagttgaatatgcccatgt |
22177552 |
T |
|
| Q |
101 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaa |
200 |
Q |
| |
|
| ||| |||| |||||| | || ||||| ||||||||| | | ||| ||||| |||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
22177551 |
tgcacataatatgacaaccttttatagcttcccttggcaacttaaacatggttgaaattccattctctagattataagacattatatatggcttataaaa |
22177452 |
T |
|
| Q |
201 |
agggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
247 |
Q |
| |
|
||| || | ||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
22177451 |
aggactggattttgcaaagtaagaagcgcaatctgagataaaatgaa |
22177405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 22169376 - 22169130
Alignment:
| Q |
1 |
tctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatcgtttcgagcttgacaccttaccccaattaaatatgcccatgt |
100 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||| ||| |||||||||||||||| | | || | |||| | |||||||| || |||||| |||||| |
|
|
| T |
22169376 |
tcttttaaaaaccaaacagtgaaaacagaattttttaatttcaccaaacaaatataactattgaaacttgtctttttaccccagttgaatatgtccatgt |
22169277 |
T |
|
| Q |
101 |
tagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaa |
200 |
Q |
| |
|
| ||| |||| |||||| | || ||||| ||||||||| | | || |||| |||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
22169276 |
tgcacataatatgacaaccttttatagcttcccttggcaacttaattatggttgcaattccattctctagattataagacattatatatggcttataaaa |
22169177 |
T |
|
| Q |
201 |
agggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
247 |
Q |
| |
|
||| || | ||||||| | ||| || ||||||||||||| ||||| |
|
|
| T |
22169176 |
aggactggattttgcatagtaagaagcgcaatctgagataaaatgaa |
22169130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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