View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_34 (Length: 377)
Name: NF7723_low_34
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 5196743 - 5197111
Alignment:
| Q |
1 |
tcttccccatttaacagaacctaccgatccacatgcaggaagcagtgctgcaatagttacttgattaggacaaatccccgaaactagcatctcccgaaac |
100 |
Q |
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| T |
5196743 |
tcttccccatttaacagaacctactgatccacatgcaggaagcagtgctgcaatagttacttgattaggacaaatccccgaaactagcatctcccgaaac |
5196842 |
T |
|
| Q |
101 |
accgtaaatgtttccctaaactgatgattttgtgcaaatccagaaatcaatgcattccatgcaaccacatcaggaataaacccctctttttgcattctct |
200 |
Q |
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| T |
5196843 |
accgtaaatgtttccctaaactgatgattttgtgcaaatccagaaatcaatgcattccatgcaaccacatcaggaataaacccctctttttgcattctct |
5196942 |
T |
|
| Q |
201 |
ccataaaaccaaaagctttcttgctatctcccaaacgagcatatgtagcaatgatagcattccacgtaaaatcattcagctcatatccttccatcttcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5196943 |
ccataaaaccaaaagctttcttgctatctcccaaacgagcatatgtagcaatgatagcattccacgtaaaatcattcggctcatatccttccatcttcat |
5197042 |
T |
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| Q |
301 |
cctctcaaacaacaccaacgcttcttcaatcctccccgcattacaaaacccacaaatcattgatgtcca |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
5197043 |
cctctcaaacaacaccaacgcttcttcaatcctccccgtattacaaaacccacaaatcatcgatgtcca |
5197111 |
T |
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