View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_37 (Length: 358)
Name: NF7723_low_37
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 43691766 - 43691670
Alignment:
| Q |
12 |
catcaaccaaagagccatccgaattcatcttaatatacatggtcatcttaaaatactggccagtcatggtcatgttattaccaatgtaatttggtgg |
108 |
Q |
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| T |
43691766 |
catcaaccaaagagccatccgaattcatcttaatatacatggtcatcttaaaatactggacagtcatggtcatgttattaccaatgtaatttggtgg |
43691670 |
T |
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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 43691518 - 43691430
Alignment:
| Q |
259 |
caaataaaattttcgaacatgtgatggtacatgatggaagaagctttgggatgccaatctaatcggatgtctaacttttccttgatgtc |
347 |
Q |
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| T |
43691518 |
caaataaaattttcgaacatgtgatggtacatgatggaagaagctttgggatgccaatctaatcggatgtctagcttttccttgatgtc |
43691430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 43711089 - 43710994
Alignment:
| Q |
12 |
catcaaccaaagagccatccgaattcatcttaatatacatggtcatcttaaaatactggccagtcatggtcatgttattaccaatgtaatttggtggg |
109 |
Q |
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| T |
43711089 |
catcaaccaaa-agtcatccaaattcatcttaacatacacggtcatcttaaaatactgg-tagtcatggtcatgttattatcaatgtcgtttggtggg |
43710994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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