View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_38 (Length: 338)
Name: NF7723_low_38
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 54216920 - 54216596
Alignment:
| Q |
1 |
tatgtcgagtgccattctagttataattgcttgaagctttgttccaacagctagaatcaccttcaagtaaatcaattattagtccnnnnnnnnnnnnnn- |
99 |
Q |
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| T |
54216920 |
tatgtcgagtgccattctagttataattgcttgaagctttgttccaacagctagaatcaccttcaagtaaatcaattattagtccttttttttttttttt |
54216821 |
T |
|
| Q |
100 |
aaacaaacatgtgcatacacacgcatgcgtgcactgtaactagatagatgcttactgctagtggaagaaaagacacccaaaatgaagcatgccaacctga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54216820 |
aaacaaacatgtgcatacacacgcatgcgtgcactgtaactagatagatgcttactgctagtggaagaaaagacacccaaaatgaagcatgccaacctga |
54216721 |
T |
|
| Q |
200 |
aaacaagttatggagacattcacaatcaataagaatttgagtgctacaaaataaaaccaatcgagagttagttaggttaaaatacaaaccgtggacattt |
299 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54216720 |
aaacaagttatagagatattcacaatcaataagaatttgagtgctacaaaataaaaccaattgagagttagttaggttaaaatacaaaccgtggacattt |
54216621 |
T |
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| Q |
300 |
acaagcaaaaataacaccactgatg |
324 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
54216620 |
acaagcaaaaataacaccactgatg |
54216596 |
T |
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