View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7723_low_39 (Length: 332)
Name: NF7723_low_39
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 34435858 - 34436165
Alignment:
| Q |
16 |
acatcacacatcaatagtttaatgcatatgaacaaatgttttaaatcagtcgcactgcaattgcgaaatattgtggtcgaatagaattgatgtaactgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34435858 |
acatcacacatcaatagtttaatgcatatgaacaaatgttttaaatcagtcgcactgcaattgcgaaatattgtggtcgaatagaattgatgtaactgta |
34435957 |
T |
|
| Q |
116 |
attgcgattttcatacggttgttgagagataaaaaatcttgacgttgcaactatagccgtggttacaaaaccgttttacagaaccttgatttgaagctat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34435958 |
attgcgattttcatacggttgttgagagataaaaaatcttgacgttgcaactataaccgcggttacaaaaccgttttacagaaccttgatttgaagctat |
34436057 |
T |
|
| Q |
216 |
gattatttcttggttgaacttaagctctagttagttgtgccaacaattaattgttccaaaaaagagtttcgatttcggaaatggaagtaacttacttgat |
315 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34436058 |
gattttttcttggttgaacataagctctagttagttgtgccaacaattaattgttccaaaaaagagtttcgatttcggaaatggaagtaacttacttgat |
34436157 |
T |
|
| Q |
316 |
gtccatct |
323 |
Q |
| |
|
| |||||| |
|
|
| T |
34436158 |
gcccatct |
34436165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University