View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_4 (Length: 794)
Name: NF7723_low_4
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 1 - 785
Target Start/End: Complemental strand, 3978835 - 3978040
Alignment:
| Q |
1 |
atgtagtcaaaattgagtaagagcagcaatgggatgaatcgagtgtcacaccatcataaa----------ccatcaaaatcacttagcagatacttcata |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3978835 |
atgtagtcaaaattgagtaagagcagcaatgggatgaatcgagtgtcacaccatcataaaacatcataaaccatcaaaatcacttagcagatacttcata |
3978736 |
T |
|
| Q |
91 |
aaggcaaaatccatgacagtcgtacaaaaacttcaaattgaaattgacaaatcaatgcatattgaagcttagttagcttttacatgttgcaaaacaacat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978735 |
aaggcaaaatccatgacagtcgtacaaaaacttcaaattgaaattgacaaatcaatgcatattgaagcttagttagcttttacatgttgcaaaacaacat |
3978636 |
T |
|
| Q |
191 |
tataggcttcatgttcctccccaaaatcctgccnnnnnnnnnnnnnnnntacttcaatttacatatagaatgaaaaaagacaccaggaacatttgcattt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978635 |
tataggcttcatgttcctccccaaaatcctgccaaaaaagaaaaagaaatacttcaatttacatatagaatgaaaaaagacaccaggaacatttgcattt |
3978536 |
T |
|
| Q |
291 |
caagtgtaagccataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatggaaaagtatac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978535 |
caagtgtaagccataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatggaaaagtatac |
3978436 |
T |
|
| Q |
391 |
ccaaaaatcaatacaataaaa-tgatgcaaaaagactgcactagaatggataaaggacaatataagaataaaaattcacaatataaatttgggaattggg |
489 |
Q |
| |
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|||||||||||||||| |||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978435 |
ccaaaaatcaatacaaaaaaaatgacgcaacaagactgcactagaatggataaagaacaatataagaataaaaattcacaatataaatttgggaattggg |
3978336 |
T |
|
| Q |
490 |
agcaaatggatgtgctcgaggaattgtataaaactaggttaagaatcaaggtcacttacaccagcccactctccaagtgtctttgcacttggaactgtca |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978335 |
agcaaatggatgtgctcgaggaattgtataaaactaggttaagaatcaaggtcacttacaccagcccactctccaagtgtctttgcacttggaactgtca |
3978236 |
T |
|
| Q |
590 |
acaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgctt |
689 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978235 |
acaagctaacattgtgctctgcgcagagggctttcaccaatttgacataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgctt |
3978136 |
T |
|
| Q |
690 |
ctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactttctaagcaccagctgcagggcagtcatgatgtccat |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978135 |
ctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactttctaagcaccagctgcagggcagtcatgatgtccat |
3978040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 536 - 752
Target Start/End: Original strand, 39233482 - 39233698
Alignment:
| Q |
536 |
caaggtcacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgac |
635 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| || |||| || | || |||||||||||||| ||||| |
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| T |
39233482 |
caagggcacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttcagcacaaagggctttcaccaacttgac |
39233581 |
T |
|
| Q |
636 |
ataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccacca |
735 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
39233582 |
gtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactttcatgaagaccgcgtgcaagtccacca |
39233681 |
T |
|
| Q |
736 |
taagcacgagactttct |
752 |
Q |
| |
|
||||||||||||||||| |
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| T |
39233682 |
taagcacgagactttct |
39233698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 39232721 - 39232797
Alignment:
| Q |
303 |
ataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatg |
379 |
Q |
| |
|
||||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||| |||||||||| |||| |
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|
| T |
39232721 |
ataccttgacaaccacacaggagcaaccagttaccttcctagcttttccttctgaatcaattttgcacaactgcatg |
39232797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 542 - 785
Target Start/End: Complemental strand, 827084 - 826841
Alignment:
| Q |
542 |
cacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatc |
641 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |||||||||| | |||||||||||||| | || || || || || | ||| ||||| || |
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| T |
827084 |
cacttacaccagcccattctccaagtgtcttcgcactaggaactgtcagaagactaacattgtgctcagcacaaagagccttgacaagtttaacatagtc |
826985 |
T |
|
| Q |
642 |
aggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagca |
741 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||| | | | ||||||||| ||||||||||||||||| || || ||||||||||||||||| || |
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| T |
826984 |
aggctggtcacaatcttctgcaagaacacaaagctgtcctgtgttcttctcaattacttttgcaccttcatggaggccacgtgcaagaccaccatatgcc |
826885 |
T |
|
| Q |
742 |
cgagactttctaagcaccagctgcagggcagtcatgatgtccat |
785 |
Q |
| |
|
||||| |||||||| || |||| |||||||||||||||||| |
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| T |
826884 |
aatgacttcctaagcacaagttgcaaggcagtcatgatgtccat |
826841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 27865038 - 27865093
Alignment:
| Q |
165 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcct |
220 |
Q |
| |
|
|||||| || || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27865038 |
agctttgacgtgctgcaaaacaacattgtaggcttcatgttcctccccaaaatcct |
27865093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 827508 - 827437
Alignment:
| Q |
303 |
ataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaact |
374 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| |||||||||||||| || || || |||||||| ||||||| |
|
|
| T |
827508 |
ataccttgaccaccacacaggagcagccggttaccttcctagcttttccctcggagtcaatcttacacaact |
827437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 827646 - 827590
Alignment:
| Q |
165 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcctg |
221 |
Q |
| |
|
|||||| || || |||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
827646 |
agctttcacgtgctgcagaacaacattgtaggcttcatgttcctccccaaagtcctg |
827590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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