View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_40 (Length: 332)
Name: NF7723_low_40
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 42639780 - 42640094
Alignment:
| Q |
1 |
cacagtttaaatatatcgttagttttgtttagttgatggtaaatgaatacttacgtccagtttcatgtgtgaaatgagcaaaagcagcagcaacctcacg |
100 |
Q |
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| T |
42639780 |
cacagtttaaatatatcgttagttttgtttggttgatggtaaatgaatacttacgtccagtttcatgtgtgaaatgagcaaaagcagcagcaacctcacg |
42639879 |
T |
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| Q |
101 |
tttggagtcatccaaggatccagacctaccaaactgattataagaattgagggcatcgagaaaagcagctcttgtgtagaagttctttcctgcacaacta |
200 |
Q |
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| T |
42639880 |
tttggagtcatccaaagatccagacctaccaaactgattataagaattgagggcatcgagaaaagcagctcttgtgtagaagttctttcctgcacaacta |
42639979 |
T |
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| Q |
201 |
gaatcagcttgatcaattatacgattgaagaaatcttgtgtaaggatgtcagccacattagcatcattgttaggcaaacttggtggtgtttggcctgcat |
300 |
Q |
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| T |
42639980 |
gaatcagcttgatcaattatacgattgaagaaatcttgtgtaaggatgtcagccacattagcatcattgttaggcaaacttggtggtgtttggcctgcat |
42640079 |
T |
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| Q |
301 |
aacaaggaccttgtt |
315 |
Q |
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| T |
42640080 |
aacaaggaccttgtt |
42640094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 46 - 274
Target Start/End: Original strand, 42634801 - 42635029
Alignment:
| Q |
46 |
aatacttacgtccagtttcatgtgtgaaatgagcaaaagcagcagcaacctcacgtttggagtcatccaaggatccagacctaccaaactgattataaga |
145 |
Q |
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| T |
42634801 |
aatacttacgtccagtttcatgagtgaaatgtgcaaaagcagctgcgatttcgcgtttggagtcatctacagaaccaaccctaccaaactgattataaga |
42634900 |
T |
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| Q |
146 |
attgagggcatcgagaaaagcagctcttgtgtagaagttctttcctgcacaactagaatcagcttgatcaattatacgattgaagaaatcttgtgtaagg |
245 |
Q |
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| T |
42634901 |
accgagggcatcaagaaaaacagctcttgaatagaagttctttcctgcacaactagaatcagcttgatcaattatactattgaagaattcttgtgtaaca |
42635000 |
T |
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| Q |
246 |
atgtcagccacattagcatcattgttagg |
274 |
Q |
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| T |
42635001 |
atgtcagccacgttgacatcattgctagg |
42635029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 42628887 - 42628940
Alignment:
| Q |
262 |
catcattgttaggcaaacttggtggtgtttggcctgcataacaaggaccttgtt |
315 |
Q |
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| T |
42628887 |
catcattgctaggcaaacttggtggtgttcggcctgcataacaaggaccttgtt |
42628940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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