View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_41 (Length: 329)
Name: NF7723_low_41
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 5331403 - 5331694
Alignment:
| Q |
20 |
tcattctctggaaaattgatagctcaaattggcagcacaatccacactttcattgttgaggtacaannnnnnnnngtcattcacctattcaaaaggaaat |
119 |
Q |
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| T |
5331403 |
tcattctctggaaaattgatagctcaaattggcagcacaatccacactttcattgttgaggtacaatttttttttgtcattcacctattcaaaaggaaat |
5331502 |
T |
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| Q |
120 |
gcatacaattgtttgatagtttctgatataatggtttgtttgtgtctcagttgaattctgacgtatcactcatgtatcagctgctaggaataggtgaaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331503 |
gcatacaattgtttgatagtttctgatataatggtttgtttgtgtctcagttgaattctgacgtatcactcatgtatcagctgctaggaataggtgaaga |
5331602 |
T |
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| Q |
220 |
aaatgaagaattaattggactcgtgaaaatttgtaaccctttctcagggccaccaaactacagctacagtccacacaattgccctcgtgatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331603 |
aaatgaagaattaattggactcgtgaaaatttgtaaccctttctcagggccaccaaactacagctacagtccacacaattgccctcgtgatg |
5331694 |
T |
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