View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_44 (Length: 320)
Name: NF7723_low_44
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 6516889 - 6517175
Alignment:
| Q |
20 |
caaaaccactcaatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatata |
119 |
Q |
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| T |
6516889 |
caaaaccactcaatatcgcatgacaggcgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatata |
6516988 |
T |
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| Q |
120 |
ttttcatttggtatgattttgctacaaattatcactgcaaagcctccaatgggtttgtctcatttagttgaagaagctataaagaaaagaaacttcatga |
219 |
Q |
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| T |
6516989 |
ttttcatttggtatgattttgctacaaattatcactgcaaagcctccaatgggtttatctcatatagttgaagaagctataaaaaaaggaaacttcatga |
6517088 |
T |
|
| Q |
220 |
acgtgcttgatccaaatgtaccaaattgtcctgttgaagaggctttggcatgtgctaagctggctttaaagtgtactgagtatagaa |
306 |
Q |
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| T |
6517089 |
acgtgcttgatccaaatgtaccaaattgtcctgttgaagaggctttggcatgtgctaagctggctttaaagtgtattgagtatagaa |
6517175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 42674065 - 42674191
Alignment:
| Q |
47 |
tgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgattttgctacaa |
146 |
Q |
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| T |
42674065 |
tgcagccggaacatttttttatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatgcttctacaa |
42674164 |
T |
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| Q |
147 |
attatcactgcaaagcctccaatgggt |
173 |
Q |
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| T |
42674165 |
atcattactggaaagactccaatgggt |
42674191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 50439406 - 50439260
Alignment:
| Q |
30 |
caatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttg |
129 |
Q |
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|||||||||||||| | |||| |||||||| || || || |||||||||||||| ||||| ||| | || ||||||||||||||| ||| |||| ||| |
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| T |
50439406 |
caatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatcagcaaacaggaatgttaggtgtgaaatcagatgtatattcacttg |
50439307 |
T |
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| Q |
130 |
gtatgattttgctacaaattatcactgcaaagcctccaatgggtttg |
176 |
Q |
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| T |
50439306 |
gaatcattttccttcaaattttgacagcaaaatcaccaatgggtttg |
50439260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 48235755 - 48235715
Alignment:
| Q |
51 |
gctggaacattttgctacattgatcctgagtatcaacaaac |
91 |
Q |
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| T |
48235755 |
gctggaacattttgttatattgatcccgagtatcaacaaac |
48235715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 3686724 - 3686780
Alignment:
| Q |
30 |
caatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaa |
86 |
Q |
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| T |
3686724 |
caatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaa |
3686780 |
T |
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