View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_45 (Length: 319)

Name: NF7723_low_45
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_45
NF7723_low_45
[»] chr4 (5 HSPs)
chr4 (226-305)||(11646374-11646453)
chr4 (83-131)||(11591158-11591206)
chr4 (83-131)||(11646461-11646509)
chr4 (18-52)||(11591093-11591127)
chr4 (18-52)||(11646540-11646574)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 11646453 - 11646374
Alignment:
Q  226 tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagacgatgtttattcaaattcagtgcataccacag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  11646453 tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagactatgtttattcaaattcagtgcatactacag 11646374  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 11591158 - 11591206
Alignment:
Q  83 attttcatcctttcaaacattaactgattattgaaaacaacagaacaat 131  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11591158 attttcatcctttcaaacattaactgatcattgaaaacaacagaacaat 11591206  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 11646509 - 11646461
Alignment:
Q  83 attttcatcctttcaaacattaactgattattgaaaacaacagaacaat 131  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11646509 attttcatcctttcaaacattaactgatcattgaaaacaacagaacaat 11646461  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 11591093 - 11591127
Alignment:
Q  18 cttctgttctgctacgttctgtagttgttgttaca 52  Q
    |||||||||||||||||||||||||||||||||||    
T  11591093 cttctgttctgctacgttctgtagttgttgttaca 11591127  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 11646574 - 11646540
Alignment:
Q  18 cttctgttctgctacgttctgtagttgttgttaca 52  Q
    |||||||||||||||||||||||||||||||||||    
T  11646574 cttctgttctgctacgttctgtagttgttgttaca 11646540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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