View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_46 (Length: 313)
Name: NF7723_low_46
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_46 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 12416037 - 12416341
Alignment:
| Q |
13 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccata----tatatcatgacatgatctagtgcgt |
108 |
Q |
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| T |
12416037 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgt |
12416136 |
T |
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| Q |
109 |
tattaagacacattaggcnnnnnnnn--tctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
206 |
Q |
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| T |
12416137 |
tattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
12416236 |
T |
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| Q |
207 |
gcaaactgaaaaaacggaaacaagatcaccattctaccagtacaagataacaatatactagtaaacgttttcaacacttgataaactaaacaaaaataaa |
306 |
Q |
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| T |
12416237 |
gcaaactg-aaaaccggaaacaagatcaccattctaccagtac-agataacaatatactagtaaatgttttcaactcttgataaactcaacaaaaataaa |
12416334 |
T |
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| Q |
307 |
aataact |
313 |
Q |
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||||||| |
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| T |
12416335 |
aataact |
12416341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 12428097 - 12428401
Alignment:
| Q |
13 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccata----tatatcatgacatgatctagtgcgt |
108 |
Q |
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| T |
12428097 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgt |
12428196 |
T |
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| Q |
109 |
tattaagacacattaggcnnnnnnnn--tctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
206 |
Q |
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| T |
12428197 |
tattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
12428296 |
T |
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| Q |
207 |
gcaaactgaaaaaacggaaacaagatcaccattctaccagtacaagataacaatatactagtaaacgttttcaacacttgataaactaaacaaaaataaa |
306 |
Q |
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| T |
12428297 |
gcaaactg-aaaaccggaaacaagatcaccattctaccagtac-agataacaatatactagtaaatgttttcaactcttgataaactcaacaaaaataaa |
12428394 |
T |
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| Q |
307 |
aataact |
313 |
Q |
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||||||| |
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| T |
12428395 |
aataact |
12428401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 12402229 - 12402298
Alignment:
| Q |
20 |
aagatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
84 |
Q |
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| T |
12402229 |
aagatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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