View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7723_low_48 (Length: 309)
Name: NF7723_low_48
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 3810442 - 3810169
Alignment:
| Q |
1 |
acttcattgattctttctgctgtaaagactgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810442 |
acttcattgattctttctgctgtaaatactgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggt-------------- |
3810357 |
T |
|
| Q |
101 |
aatgtcaaacccatcttcacttgctgctcgacaaaaatcaggatcatctttagaaatatgagactttgcattgtcttgttgaatgaaaattgtcttccct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3810356 |
-----caaacccatcttcacttgctgctcgacaaaaatcaggatcatctttagaaatatgagactttgcattctcttgttgaatgaaaattgtcttccct |
3810262 |
T |
|
| Q |
201 |
acatcttctattggccagcaattcttaagggctggtaagattttgctcatcatgaaagttttattcacctctcttgtcacagaagttataggt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810261 |
acatcttctattggccagcaattcttaagggctggtaagattttgctcatcatgaaagttttattcacctctcttgtcacagaagttataggt |
3810169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 1329651 - 1329564
Alignment:
| Q |
30 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
117 |
Q |
| |
|
||||||||| |||| ||||| | ||| |||||||| | || || ||||| ||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
1329651 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
1329564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 45489304 - 45489216
Alignment:
| Q |
48 |
cccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
136 |
Q |
| |
|
||||| ||||| |||||||||||||| || || || |||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
45489304 |
cccaaatccaaaacattcaaatcgggagagttaggtggttgacatatcaatcgaatgtcaaacccaccttcagaagctgctctacaaaa |
45489216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 42539903 - 42539990
Alignment:
| Q |
30 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
117 |
Q |
| |
|
||||||||| |||| ||||| | ||| |||||||| | || || ||||| ||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
42539903 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
42539990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 8187209 - 8187133
Alignment:
| Q |
60 |
acattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
136 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||| ||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
8187209 |
acattcaaatcgggagaattaggtcgttaacatatcaatcgaatgtcaaacccaccttcaaaagctgctctacaaaa |
8187133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 40286926 - 40286990
Alignment:
| Q |
42 |
aaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtc |
106 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| ||||| ||||||||| || |||| |||||||| |
|
|
| T |
40286926 |
aaaaagcctaaatccaatacgttcaaatcgggagaattaggaggttgaaaagtcaaacgaatgtc |
40286990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University