View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_49 (Length: 291)
Name: NF7723_low_49
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_49 |
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| [»] scaffold0790 (1 HSPs) |
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Alignment Details
Target: scaffold0790 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0790
Description:
Target: scaffold0790; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 349 - 235
Alignment:
| Q |
122 |
catacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccattccacatattcaccaccaacaaaaactctcacga |
221 |
Q |
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| T |
349 |
catacactttgaagggtagttttgaatcggaagtgagagtgagtttgaaataaacctttccaccgttccacatattcaccaccaacaaaaactctcacgc |
250 |
T |
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| Q |
222 |
tacccccaccatctt |
236 |
Q |
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| T |
249 |
tacccccaccatctt |
235 |
T |
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Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 32285033 - 32284941
Alignment:
| Q |
182 |
caccattccacatattcaccaccaacaaaaactctcacgatacccccaccatcttcgccccagttcgacatatattctggtcaatcatcattc |
274 |
Q |
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| T |
32285033 |
caccattccacatattcaccaccaacaaaaactctcacgatacccccaccatcttcgccccagttcgacatatattttggtcaatcatcattc |
32284941 |
T |
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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 24428303 - 24428207
Alignment:
| Q |
122 |
catacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccacca---ttccacatattcaccaccaacaaaaactc |
215 |
Q |
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| T |
24428303 |
catacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccaccgttcgccatattcaccaccaactaaaactc |
24428207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 33985988 - 33986068
Alignment:
| Q |
159 |
agtgactttgaaagaaacctttccaccattccacatattcaccaccaacaaaaactctcacgatacccccaccatcttcgc |
239 |
Q |
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| T |
33985988 |
agtgactttgaaagaaacctttccaccgttccacatattcaccaccaacaaaaactctcacgctatccccaccatcttcgc |
33986068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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