View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_50 (Length: 287)
Name: NF7723_low_50
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 48569184 - 48569421
Alignment:
| Q |
20 |
gagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtata |
119 |
Q |
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| T |
48569184 |
gagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtata |
48569283 |
T |
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| Q |
120 |
ttcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaataccttcaaggcatttcctttctttggttgtaccacagccttt |
218 |
Q |
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| T |
48569284 |
ttcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaataccttcaaggcatttcctttctttggttgtaccacagccttt |
48569383 |
T |
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| Q |
219 |
ccaatacttctgttttctgtgtgaaaattgattatgaatt |
258 |
Q |
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| T |
48569384 |
ccaatacttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 10821900 - 10821749
Alignment:
| Q |
20 |
gagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtata |
119 |
Q |
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| T |
10821900 |
gagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtatg |
10821801 |
T |
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| Q |
120 |
ttcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt |
169 |
Q |
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| T |
10821800 |
tttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 36145486 - 36145584
Alignment:
| Q |
20 |
gagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
118 |
Q |
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| T |
36145486 |
gagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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