View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_59 (Length: 248)

Name: NF7723_low_59
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_59
NF7723_low_59
[»] chr2 (2 HSPs)
chr2 (9-248)||(12416333-12416568)
chr2 (9-248)||(12428393-12428628)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 12416568 - 12416333
Alignment:
Q  9 gagatggacatcacatccaatagttcttatgattatggtttcaaatccgagaatgtttcaaatgctaaccctacaactgtacggcagttggtgaaatttc 108  Q
    |||||||||||  |||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12416568 gagatggacatagcatccaatagttcttattcttatgatttcaaatccgagaatgtttcaaatgcttaccctacaactgtacagcagttggtgaaatttc 12416469  T
Q  109 actattcagttatggcaaaaaaccaagtttctgaaagaattttacctacaattcctggaatatgaattgtctatgacttcacttttctgtgacctagttc 208  Q
    ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12416468 acttttcagctatggcaaaaaaccaagtttctgaaagaattttaactacaattcctggaatatgaattatctatgacttcacttttctgtgacctagttc 12416369  T
Q  209 cttgctgaagacttgttttatatatgttggtagttatttt 248  Q
    ||||||||||||||||||    ||||||||||||||||||    
T  12416368 cttgctgaagacttgttt----tatgttggtagttatttt 12416333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 12428628 - 12428393
Alignment:
Q  9 gagatggacatcacatccaatagttcttatgattatggtttcaaatccgagaatgtttcaaatgctaaccctacaactgtacggcagttggtgaaatttc 108  Q
    |||||||||||  |||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12428628 gagatggacatagcatccaatagttcttattcttatgatttcaaatccgagaatgtttcaaatgcttaccctacaactgtacagcagttggtgaaatttc 12428529  T
Q  109 actattcagttatggcaaaaaaccaagtttctgaaagaattttacctacaattcctggaatatgaattgtctatgacttcacttttctgtgacctagttc 208  Q
    ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12428528 acttttcagctatggcaaaaaaccaagtttctgaaagaattttaactacaattcctggaatatgaattatctatgacttcacttttctgtgacctagttc 12428429  T
Q  209 cttgctgaagacttgttttatatatgttggtagttatttt 248  Q
    ||||||||||||||||||    ||||||||||||||||||    
T  12428428 cttgctgaagacttgttt----tatgttggtagttatttt 12428393  T

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