View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_6 (Length: 713)

Name: NF7723_low_6
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_6
NF7723_low_6
[»] chr1 (1 HSPs)
chr1 (12-710)||(34092365-34093063)


Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 12 - 710
Target Start/End: Original strand, 34092365 - 34093063
Alignment:
Q  12 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092365 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 34092464  T
Q  112 aatcaaaatatttatttcatctttaacataacatcgnnnnnnnaaaatatctttcaaatttaattaaaacatcaatattggttttnnnnnnntctttaac 211  Q
    ||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||       ||||||||    
T  34092465 aatcaaaatatttatttaatctttaacataacatcgtttttttaaaatatctttcaaatttaattaaaacatcaaaattggttttaaaaaaatctttaac 34092564  T
Q  212 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagttcatcctaattcaaatttca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34092565 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagttcgtcctaattcaaatttca 34092664  T
Q  312 ataataatattgataggttaatcatctttattcatgggttcgaacatgaaacttcaacgtttcgtattatttggatcaccattatcattttgtctgcaaa 411  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34092665 ataataatattgataggttaatcacctttattcataggttcgaacatgaaacttcaacgtttcgtattatttggatcaccataatcatttcgtctgcaaa 34092764  T
Q  412 caaaaataaaaagaaagagatataactcttcataaacnnnnnnnnnnnnnnnnnnnaaatacatgattaggacttttctcaatgagaaactttgccaaag 511  Q
    |||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||| ||||||||||||||||    
T  34092765 caaaaataaaaagaaagagatataactcttcataaacttttttatttttagtttttaaatacatgattaggacttttctcaataagaaactttgccaaag 34092864  T
Q  512 tcagattgatattgaataattggctaaacaaatctcacattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcg 611  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092865 tcagattgatattgaataattggcaaaacaaatctcacattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcg 34092964  T
Q  612 ttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatgaagaagaggcattaggttaggtatatgtgatgatgtcca 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34092965 ttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatgaagaagaggcattaggttaggtaaatgtgatgatgtcca 34093063  T

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