View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_62 (Length: 236)
Name: NF7723_low_62
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38661566 - 38661345
Alignment:
| Q |
1 |
cagccatcaaatctgaaatggaattgaggactgttttttatcctaagtccttgtacagtcaaatttgaactcataaaaaaccttatagcctgcaatatac |
100 |
Q |
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| T |
38661566 |
cagccatcaaatctgaaatggaattgaggactgttttttatcctaagtccttgtacagtcaaatttgaactcataaaaaaccttatagcctgcaatatac |
38661467 |
T |
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| Q |
101 |
aaatattttttgttaaccataatgcatttacacaaacagaagatgtatattgtataaaatacacaagataggtttttaatacttacaactgggctgtcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38661466 |
aaatattttttgttaaccataatgcatttacacaaacagaagatgtatattgtataaaatacacaagataggtttttaatacttacaactgggctgtcac |
38661367 |
T |
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| Q |
201 |
aaggtcctggtaatgttgttcc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38661366 |
aaggtcctggtaatgttgttcc |
38661345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 45102591 - 45102680
Alignment:
| Q |
5 |
catcaaatctgaaatggaattgaggactgttttttatcctaagtccttgtacagtcaaatttgaactcataaaaaaccttatagcctgca |
94 |
Q |
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| T |
45102591 |
catcaaatctgaaattgaactgagggctgttcttcaccttaagtcctttcacagtcaagttagaactcataaaaaaccttatggcctgca |
45102680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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