View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_64 (Length: 235)

Name: NF7723_low_64
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_64
NF7723_low_64
[»] chr3 (5 HSPs)
chr3 (9-226)||(14693217-14693434)
chr3 (33-226)||(10782167-10782360)
chr3 (21-226)||(7401977-7402182)
chr3 (10-223)||(13306870-13307082)
chr3 (12-220)||(10150777-10150985)
[»] chr8 (3 HSPs)
chr8 (42-226)||(1735317-1735501)
chr8 (9-226)||(17422845-17423062)
chr8 (9-217)||(22348764-22348972)
[»] chr7 (3 HSPs)
chr7 (9-226)||(14342647-14342864)
chr7 (9-174)||(18133578-18133743)
chr7 (14-199)||(18171652-18171837)
[»] scaffold0022 (1 HSPs)
scaffold0022 (9-220)||(11347-11558)
[»] chr2 (4 HSPs)
chr2 (9-217)||(23200629-23200837)
chr2 (9-217)||(22638304-22638512)
chr2 (9-217)||(23626258-23626466)
chr2 (9-196)||(24911884-24912070)
[»] scaffold0319 (1 HSPs)
scaffold0319 (9-217)||(9626-9834)
[»] chr6 (2 HSPs)
chr6 (9-205)||(23435091-23435287)
chr6 (9-217)||(19035178-19035386)
[»] scaffold0130 (1 HSPs)
scaffold0130 (9-199)||(43131-43321)
[»] scaffold0016 (2 HSPs)
scaffold0016 (9-217)||(126559-126767)
scaffold0016 (60-196)||(179311-179447)
[»] chr4 (2 HSPs)
chr4 (9-220)||(13289364-13289575)
chr4 (9-217)||(14772567-14772775)
[»] scaffold0040 (1 HSPs)
scaffold0040 (9-217)||(29608-29816)
[»] scaffold0241 (1 HSPs)
scaffold0241 (42-217)||(11493-11668)
[»] scaffold0108 (1 HSPs)
scaffold0108 (9-220)||(26194-26405)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-217)||(126760-126968)
[»] chr1 (2 HSPs)
chr1 (9-217)||(22805838-22806046)
chr1 (9-126)||(41380414-41380531)
[»] chr5 (1 HSPs)
chr5 (39-217)||(21511006-21511184)
[»] scaffold0282 (1 HSPs)
scaffold0282 (9-217)||(5538-5746)
[»] scaffold0005 (1 HSPs)
scaffold0005 (57-217)||(67003-67163)
[»] scaffold0064 (1 HSPs)
scaffold0064 (12-220)||(37590-37798)
[»] scaffold0656 (1 HSPs)
scaffold0656 (9-217)||(5028-5235)
[»] scaffold0026 (1 HSPs)
scaffold0026 (9-217)||(138973-139181)
[»] scaffold0023 (2 HSPs)
scaffold0023 (39-147)||(65268-65376)
scaffold0023 (39-147)||(74446-74554)
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-196)||(159086-159273)
[»] scaffold0107 (1 HSPs)
scaffold0107 (9-157)||(1844-1992)
[»] scaffold0046 (1 HSPs)
scaffold0046 (88-223)||(33613-33748)
[»] scaffold0013 (4 HSPs)
scaffold0013 (60-196)||(75405-75541)
scaffold0013 (102-196)||(83876-83970)
scaffold0013 (102-196)||(121548-121642)
scaffold0013 (141-223)||(148842-148924)
[»] scaffold0362 (1 HSPs)
scaffold0362 (46-217)||(14463-14634)
[»] scaffold0053 (1 HSPs)
scaffold0053 (102-225)||(42256-42379)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 14693434 - 14693217
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||      
T  14693434 gacatcaccaatattgacaaaacggaggacaagcagaaagccgtgttcgaaatggttaaaaaaccagcaacagagagaatttcacccccattgtcaatct 14693335  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||    
T  14693334 tgaagaaagaccattccaaagaggataaggagatgacttcaaatttcacggaatctgacccaaacctcgacatagtttgcaatgtggtttctatcttgcc 14693235  T
Q  209 tgtggaatatgatgtcca 226  Q
    ||||||||| ||||||||    
T  14693234 tgtggaatacgatgtcca 14693217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 10782167 - 10782360
Alignment:
Q  33 gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaag 132  Q
    |||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||| | |||||||    
T  10782167 gaggacaagcagaaagctgtgtttgagatggttaagaagccagcaacagagcgaatttcgcccccattgtcgattctgatgaaagatcatccaaaagaag 10782266  T
Q  133 atgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgtcca 226  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  10782267 atgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatgatgtcca 10782360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 7402182 - 7401977
Alignment:
Q  21 attgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatc 120  Q
    ||||||||||  ||||  || |||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||||| |||||||  ||     
T  7402182 attgacaaaatggaggataaacagaaagctgtgttcgaaatggttaagaaggcagcaacagaaagaatttcacccccattgtcaattttgaagaagtatt 7402083  T
Q  121 attccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatga 220  Q
     ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||| |||||| |||||| ||    
T  7402082 gttccaaagaggatgaggagatgacttcaaatttcacggaatgtgacccgagtctcgacatagtttgcaatgtggtttcaatcctgcctgaggaatacga 7401983  T
Q  221 tgtcca 226  Q
    ||||||    
T  7401982 tgtcca 7401977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 13307082 - 13306870
Alignment:
Q  10 acatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattct 109  Q
    ||||||||||| || | |||||| |||  ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |    
T  13307082 acatcaccaatgtt-ataaaacacaggataagcagaaaactgtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaatttt 13306984  T
Q  110 gaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcct 209  Q
    ||||||||||||| ||||||| ||||| || |||||||| |||||||||| ||||||||| ||||| || |||||||||||||||||||| ||| | ||     
T  13306983 gaagaaagatcatcccaaagaggatgaagatatgacttcgaatttcacgggatctgaccctagtctcgatatagtttgcaatgtggtttctatcctaccg 13306884  T
Q  210 gtggaatatgatgt 223  Q
    |||||||| |||||    
T  13306883 gtggaatacgatgt 13306870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 10150777 - 10150985
Alignment:
Q  12 atcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctga 111  Q
    ||||||||| ||||||||  |||||||||||  |||| |||||||||||||||||| |||||||  |||||| |||| |||||||||||||||||| |||    
T  10150777 atcaccaatgttgacaaaggagagggcaagcgaaaagatgtgttcgaaatggttaaaaaaccagtcacagagagaatctcacccccattgtcaattttga 10150876  T
Q  112 agaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgt 211  Q
    ||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||| ||  | |||||    
T  10150877 agaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtcttgacatagtatgcaatgtggtttctatactacctgt 10150976  T
Q  212 ggaatatga 220  Q
    |||||||||    
T  10150977 ggaatatga 10150985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 1735317 - 1735501
Alignment:
Q  42 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 141  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1735317 cagaaagctgtgttcgagatggttaagaagccagcaacagaacgaatttcacccccattgtcaattctgaagaaagatcattcaaaagaagacgaggaga 1735416  T
Q  142 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgtcca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  1735417 tgacttcaaatttcacggaatctgacccaagtcttgacatagtctgtaatgtggtttccatcttgcctgtggaatacgatgtcca 1735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 17423062 - 17422845
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| |||||||||| ||||  ||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||      
T  17423062 gacatcaccaatgttgacaaaacggaggataagcagaaagaggtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaatct 17422963  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||| || || ||||||||||||||||||||||| ||| | ||    
T  17422962 tgaagaaagatcatcccaaagaggatgaggagatgacttcgaatttcacgggatctgacccgagcctcgacatagtttgcaatgtggtttctatcctacc 17422863  T
Q  209 tgtggaatatgatgtcca 226  Q
    ||||||||| ||||||||    
T  17422862 tgtggaatacgatgtcca 17422845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 22348972 - 22348764
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||    | ||||||||||||| |||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||     
T  22348972 gacatcaccaatgttgacaaagggaaaggcaagcagaaagttgtgttcgaaatggttaaaaaaccagcaatagagagaatctcacccccattgtcaattt 22348873  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||  | ||||||||| |||||||| || || |||||||||||||| ||| | ||    
T  22348872 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcattggatctgaccccagtcttgatatcgtatgcaatgtggtttcgatcctacc 22348773  T
Q  209 tgtggaata 217  Q
    |||| ||||    
T  22348772 tgtgaaata 22348764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 14342864 - 14342647
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    ||||| ||||| |||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||     
T  14342864 gacattaccaacattgaccaaacggaggataagcagaaagctgtgttcgaaatggttaagaaaccagcaacaaaaagaatttcacccccattgtcaattt 14342765  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||    
T  14342764 tgaagaaagattgttccaaagaggatgaggagatgacttcaaatttcacggaatctgacccgagcctcgacatagtttgcaatgtggtttcaatcctgcc 14342665  T
Q  209 tgtggaatatgatgtcca 226  Q
    ||||||||| ||||||||    
T  14342664 tgtggaatacgatgtcca 14342647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 18133743 - 18133578
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    ||||||||||||||||||||||  ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133743 gacatcaccaatattgacaaaagggagggcaagcaaaaagttgtgttcgagatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 18133644  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc 174  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133643 tgaagaaagatcgttccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc 18133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 18171837 - 18171652
Alignment:
Q  14 caccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaag 113  Q
    ||||||| ||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||  |||||    
T  18171837 caccaatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagaaagaatttcgcccccattgtcaatcttgaag 18171738  T
Q  114 aaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 199  Q
    ||||||||| |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| | ||||||||||||    
T  18171737 aaagatcatcccaaggaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtacaatgtggtttc 18171652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 11347 - 11558
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||||     
T  11347 gacatcaccaatgttgacaaaacagagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagagagaatctcgcccccattgtcaattt 11446  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||||||| ||| | ||    
T  11447 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactgaatctgaccctagtctcaacatagtatgcaatgtggtttctatcctacc 11546  T
Q  209 tgtggaatatga 220  Q
    | ||||||||||    
T  11547 tatggaatatga 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 23200837 - 23200629
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     
T  23200837 gacatcaccaatgttgacaaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 23200738  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||||||| ||||||| ||||| || |||||||| |||||||||| ||||||||| ||||| || ||||| |||||||||||||| ||| | ||    
T  23200737 tgaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcacgggatctgaccctagtctcgatatagtgtgcaatgtggtttctatcctacc 23200638  T
Q  209 tgtggaata 217  Q
     ||||||||    
T  23200637 ggtggaata 23200629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 22638304 - 22638512
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    ||||||||| || |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     
T  22638304 gacatcaccgatgttgataaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 22638403  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||    
T  22638404 tgaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcctacc 22638503  T
Q  209 tgtggaata 217  Q
     ||||||||    
T  22638504 ggtggaata 22638512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 23626466 - 23626258
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||      
T  23626466 gacatcaccaatgttgacaaaacagagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaatat 23626367  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||| ||||||||| |||| || ||||  || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||    
T  23626366 tgaaaaaagatcatcccaaggaggatgtagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcctacc 23626267  T
Q  209 tgtggaata 217  Q
     ||||||||    
T  23626266 ggtggaata 23626258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 24911884 - 24912070
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||||||||||||    | || ||||||| |||||| |||||||||||||| |||||||||||| || ||||||||||||| ||||||||      
T  24911884 gacatcaccaatattgacaaagggaaaggaaagcagagagctgttttcgaaatggttaaaaaaccagcaacaaagagaatttcaccccc-ttgtcaatct 24911982  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 196  Q
    | ||||| || ||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||    
T  24911983 taaagaaggaccatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgacatagtatgcaatgtggt 24912070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 9626 - 9834
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||     
T  9626 gacatcaccaatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattt 9725  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||| ||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||    
T  9726 taaagaaagaacatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacc 9825  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  9826 tgtggaata 9834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 23435091 - 23435287
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||     
T  23435091 gacatcaccaatgttgacaaaacagagggtaagcagaaggttgtgttcgaaatggttaagaaaccagcaatagagagaatctcgcccccattgtcaattt 23435190  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatctt 205  Q
    |||||||||||||| |||| || ||||| || |||||||| |||||||||| ||||||||| ||||| |||||||| |||||||||||||| |||||    
T  23435191 tgaagaaagatcatcccaaggaggatgaagaaatgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttctatctt 23435287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 19035386 - 19035178
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||  |||||||||||| |||||| |||||||||| ||||| ||||||||||||||| |||| ||| | ||||||||||||     
T  19035386 gacatcaccaatgttgacaaaggagagggcaagcaaaaagctatgttcgaaatagttaaaaaaccagcaacagagagaatctcatctccattgtcaattt 19035287  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||| || || ||||| | ||||| || |||||||| |||||||| | ||||||||| |||||||| ||  | ||||||||||| || ||| | ||    
T  19035286 tgaagaaaaataatcccaaaaaggatgaagaaatgacttcgaatttcactggatctgaccccagtcttgatattatatgcaatgtggtctcgatcctacc 19035187  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  19035186 tgtggaata 19035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 43131 - 43321
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||     
T  43131 gacatcaccaatgttgataaaacagagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 43230  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 199  Q
    |||||||||||||| |||| || ||||| ||  ||||||| |||||||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  43231 tgaagaaagatcatcccaaggaggatgaagaactgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttc 43321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 126767 - 126559
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    ||||||||| || |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     
T  126767 gacatcaccgatgttgataaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 126668  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| || ||||| |||||||||||||| ||| | ||    
T  126667 tgaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgatatagtgtgcaatgtggtttctatcctacc 126568  T
Q  209 tgtggaata 217  Q
     ||||||||    
T  126567 ggtggaata 126559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 179447 - 179311
Alignment:
Q  60 atggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacgg 159  Q
    |||||||| ||| |||| |||||  |||| || || || ||||||||| |||||||||| ||| | ||||| ||||| || ||||| || |||||| |      
T  179447 atggttaaaaaatcagccacagaaagaatctcccctcctttgtcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtcgaatttctcca 179348  T
Q  160 aatctgacccaagtcttgacatagtttgcaatgtggt 196  Q
    | |||||||||||  | || ||||| |||||||||||    
T  179347 agtctgacccaagcttcgatatagtgtgcaatgtggt 179311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 13289575 - 13289364
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| || |||||||||||||||     
T  13289575 gacatcaccaatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcgcccccattgtcaattt 13289476  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||    
T  13289475 taaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacc 13289376  T
Q  209 tgtggaatatga 220  Q
    | ||||||||||    
T  13289375 tttggaatatga 13289364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 14772775 - 14772567
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||    | || || |||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  14772775 gacatcaccaatgttgacaaagggaaaggaaaacagagagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattc 14772676  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| || ||||| ||||||||||| || ||| | ||    
T  14772675 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcgatcctacc 14772576  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  14772575 tgtggaata 14772567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 29608 - 29816
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||| |||||||| | |||| |||| |||||||| |||||||||     
T  29608 gacatcaccaatattgacaaaagaaagggcaagcaaaaagatgtgttcgaaatggttaaaaaaccagccatagagagaatctcacccccgttgtcaattt 29707  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    |||||||||||||| ||||||| ||||| || ||||| ||| ||||||| | ||||||||| || || |||||||| |||||||||||||| ||| | ||    
T  29708 tgaagaaagatcatcccaaagaggatgaagaaatgacctcagatttcaccggatctgaccccagcctagacatagtatgcaatgtggtttctatcctacc 29807  T
Q  209 tgtggaata 217  Q
     ||||||||    
T  29808 agtggaata 29816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 11493 - 11668
Alignment:
Q  42 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 141  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||| | |||||||||||| ||||||| ||||| || |    
T  11493 cagaaagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattataaagaaagatcatcccaaagaggatgaagaaa 11592  T
Q  142 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 217  Q
    |||||||||||||||| | ||||||||| |||||||| || || ||||||||||| || ||| | |||||||||||    
T  11593 tgacttcaaatttcactggatctgaccccagtcttgatatcgtatgcaatgtggtctcaatcctacctgtggaata 11668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 26194 - 26405
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||  |||||  || |||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||     
T  26194 gacatcaccaatgttgacaaaggagaggataaacagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattt 26293  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    ||||||||||   |  ||| || ||||| ||||||||||| |||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||| | ||    
T  26294 tgaagaaagactctctcaaggaggatgaagagatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaacgtggtgtccatcctacc 26393  T
Q  209 tgtggaatatga 220  Q
    ||||||||||||    
T  26394 tgtggaatatga 26405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 126968 - 126760
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||| ||||| ||||||||    |||| ||||||||||| ||||||||||||||||| |||||| |||||||| |||| ||||||||||||| ||||     
T  126968 gacatctccaatgttgacaaagggaagggaaagcagaaagcggtgttcgaaatggttaaaaaaccaacaacagagagaatctcacccccattgtgaattt 126869  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||| |||||||| || || ||||||||||| || ||| | ||    
T  126868 taaagaaagatcatcccaatgaggatgaagaaatgacttcaaatttcacgggatctgaccccagtcttgatatcgtatgcaatgtggtctcgatcctacc 126769  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  126768 tgtggaata 126760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 22806046 - 22805838
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||    | || ||||||| |||||| || ||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  22806046 gacatcaccaatgttgacaaagggaaaggaaagcagagagctgtatttgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattc 22805947  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| | ||| || ||||| ||||||||||| || ||| | ||    
T  22805946 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccaatctcgatatagtatgcaatgtggtctcaatcctacc 22805847  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  22805846 tgtggaata 22805838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 41380531 - 41380414
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||| |||||| |||||||| |  |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||     
T  41380531 gacaccaccaacattgacaagatggagggcaagcagaaagctgtgttcgagatggttaagaagccagcaacagagcgaatttcacccccattgtcaattt 41380432  T
Q  109 tgaagaaagatcattcca 126  Q
    ||||||||||||||||||    
T  41380431 tgaagaaagatcattcca 41380414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 21511006 - 21511184
Alignment:
Q  39 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 138  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| | |||||||||||| |||| || ||||| |    
T  21511006 aagcagaaagcggtgttcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaggaggatgaag 21511105  T
Q  139 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 217  Q
    | ||||||||||||||||| | ||||||||| |||||||| ||  | ||||||||||| || ||||| | |||||||||    
T  21511106 aaatgacttcaaatttcactggatctgaccccagtcttgatatcatatgcaatgtggtctcgatcttacttgtggaata 21511184  T

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Target: scaffold0282 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 5746 - 5538
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||    | || ||||||| || ||| || ||||||||| | ||||||||||||||| |||| |||||||||||||||||||    
T  5746 gacatcaccaatgttgacaaagggaaaggaaagcagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattc 5647  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| || ||||| ||||||||||| || ||  | ||    
T  5646 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcaattctacc 5547  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  5546 tgtggaata 5538  T

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Target: scaffold0005 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 67003 - 67163
Alignment:
Q  57 gaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttca 156  Q
    ||||||||| | ||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||||||||    
T  67003 gaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttca 67102  T
Q  157 cggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 217  Q
    | | ||||||||| ||||| || ||||| ||||||||||| || ||| | |||||||||||    
T  67103 ctggatctgaccccagtctcgatatagtatgcaatgtggtctcaatcctacctgtggaata 67163  T

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Target: scaffold0064 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 37798 - 37590
Alignment:
Q  12 atcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctga 111  Q
    ||||||||| ||| ||||  |||||  || |||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| |||    
T  37798 atcaccaattttgtcaaaggagaggttaaacagaaagctgtgttcgaaatggttaaaaagccagcaacatagagaatttcacccccattgtcaattttga 37699  T
Q  112 agaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgt 211  Q
    |||||||   | |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| || || ||||| || ||| | |||||    
T  37698 agaaagactttcccaaggaggatgaagatatgacttcgaatttcactggatctgaccctagtctcgacatagtatgtaacgtggtgtctatcctacctgt 37599  T
Q  212 ggaatatga 220  Q
    |||||||||    
T  37598 ggaatatga 37590  T

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Target: scaffold0656 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0656
Description:

Target: scaffold0656; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 5028 - 5235
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||||||||||||  | |||| ||||| | |||||| |||||||||||||| || |||||||||||| |||| |||||||| ||||||||      
T  5028 gacatcaccaatattgacaaaggaaaggg-aagcaaatagctgttttcgaaatggttaaaaagccagcaacagagagaatctcaccccccttgtcaatct 5126  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||| ||| |||| || ||||| || |||||||| |||||||| | ||||||||  ||||| |||||||| ||||||||||| || ||  | ||    
T  5127 taaagaaagaccatcccaaggaggatgaagaaatgacttcgaatttcactggatctgacctcagtctcgacatagtatgcaatgtggtatcaattctacc 5226  T
Q  209 tgtggaata 217  Q
    |||||||||    
T  5227 tgtggaata 5235  T

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Target: scaffold0026 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 139181 - 138973
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||    | || ||||||| |||||| |||||||||||||| |||||||||||| || | || ||||| || ||||||||      
T  139181 gacatcaccaatgttgacaaagggaaaggaaagcagagagctgtattcgaaatggttaaaaaaccagcaacaaagaggatctcacctcccttgtcaatct 139082  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 208  Q
    | |||||||| ||| ||||||| ||||| || |||||||| |||||||| |  |||||||| ||||| |||||||| |||||||||||||| ||| | ||    
T  139081 taaagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcactgggtctgaccctagtctcgacatagtatgcaatgtggtttcaatcctacc 138982  T
Q  209 tgtggaata 217  Q
    ||| |||||    
T  138981 tgtagaata 138973  T

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Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 65268 - 65376
Alignment:
Q  39 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 138  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| | |||||||||||| ||||||| ||||| |    
T  65268 aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag 65367  T
Q  139 agatgactt 147  Q
    | |||||||    
T  65368 aaatgactt 65376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 74446 - 74554
Alignment:
Q  39 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 138  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| | |||||||||||| ||||||| ||||| |    
T  74446 aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag 74545  T
Q  139 agatgactt 147  Q
    | |||||||    
T  74546 aaatgactt 74554  T

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Target: scaffold0019 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 159273 - 159086
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||||||||||||    | || ||||||||||| || || ||||||||||| || |||||||||||  |||| ||||| || || |||||      
T  159273 gacatcaccaatattgacaaagggaaagggaagcagaaagccgtttttgaaatggttaaaaagccagcaacagaaagaatctcaccgcccttatcaatct 159174  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 196  Q
    |||||||| | ||| |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||    
T  159173 tgaagaaaaaccatcccaaggaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggt 159086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 1844 - 1992
Alignment:
Q  9 gacatcaccaatattgacaaaacagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 108  Q
    |||||||||||| ||||||||    | || ||||||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||| ||||||||      
T  1844 gacatcaccaatgttgacaaagggaaaggaaagcagagagctgttttcgaaatggttaaaaaaccagcaacagagagaatctcaccccccttgtcaatct 1943  T
Q  109 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcac 157  Q
    | |||||||| ||| ||||  | ||||| || |||||||| ||||||||    
T  1944 taaagaaagaccatcccaagtaggatgaagaaatgacttcgaatttcac 1992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 33613 - 33748
Alignment:
Q  88 tttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttg 187  Q
    ||||||| || || |||||  |||||||||| ||| ||||||| ||||| || |||||||| |||||||  | ||||||||| ||||| |||||||| ||    
T  33613 tttcacctcccttatcaatcttgaagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcattggatctgaccccagtctcgacatagtgtg 33712  T
Q  188 caatgtggtttccatcttgcctgtggaatatgatgt 223  Q
    ||||||||| ||  | |||||||||||||| |||||    
T  33713 caatgtggtgtcagttttgcctgtggaatacgatgt 33748  T

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Target: scaffold0013 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 75405 - 75541
Alignment:
Q  60 atggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacgg 159  Q
    |||||||| |||||||| || ||  |||| || || || || |||||| |||||||||| ||| | ||||| ||||| || ||||| ||||||||||| |    
T  75405 atggttaaaaaaccagccacggaaagaatctcccctcctttatcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtcaaatttcacag 75504  T
Q  160 aatctgacccaagtcttgacatagtttgcaatgtggt 196  Q
    |||||||| ||||||| || ||||| |||||||||||    
T  75505 aatctgactcaagtctcgatatagtatgcaatgtggt 75541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 83876 - 83970
Alignment:
Q  102 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 196  Q
    |||||| |||||||||| ||| | ||||| |||||  | ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  83876 tcaattttgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt 83970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 121548 - 121642
Alignment:
Q  102 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 196  Q
    |||||| |||||||||| ||| | ||||| |||||  | ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  121548 tcaattttgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt 121642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 148842 - 148924
Alignment:
Q  141 atgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaatatgatgt 223  Q
    ||||| |||||||||||  |||||||||||||||| || ||||| ||||||||||| || || |||| ||| |||||||||||    
T  148842 atgacgtcaaatttcacaaaatctgacccaagtctcgatatagtatgcaatgtggtatcaatattgcatgttgaatatgatgt 148924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 14463 - 14634
Alignment:
Q  46 aagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgac 145  Q
    ||||||| |||||||||||||| |||||||| || ||  |||| || || || || |||||| |||||| ||||||| | || || ||||| || |||||    
T  14463 aagctgttttcgaaatggttaaaaaaccagccacggaaagaatctcccctcccttatcaattttgaagagagatcatcctaaggaggatgaagaaatgac 14562  T
Q  146 ttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggaata 217  Q
    ||| |||||||| | |||| |||| ||||| || ||| | |||||||| || ||  | ||||||||||||||    
T  14563 ttcgaatttcactggatctaaccccagtctcgatataatatgcaatgtcgtgtcagttttgcctgtggaata 14634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 42379 - 42256
Alignment:
Q  102 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttcca 201  Q
    |||||| |||||||| ||||| | || || ||||| || ||||| || |||||||| |||||||| |||||||| || ||||| ||||||||||| |       
T  42379 tcaattttgaagaaaaatcatcctaaggaggatgaagaaatgacgtcgaatttcactgaatctgatccaagtctcgatatagtgtgcaatgtggtgttag 42280  T
Q  202 tcttgcctgtggaatatgatgtcc 225  Q
    | |||||||| ||||| |||||||    
T  42279 ttttgcctgttgaatacgatgtcc 42256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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