View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_7 (Length: 706)

Name: NF7723_low_7
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_7
NF7723_low_7
[»] chr6 (31 HSPs)
chr6 (18-706)||(25195527-25196202)
chr6 (283-384)||(4910906-4911009)
chr6 (560-657)||(10564917-10565014)
chr6 (273-384)||(16540105-16540218)
chr6 (229-355)||(31305777-31305905)
chr6 (279-388)||(6654070-6654181)
chr6 (260-385)||(34620883-34621010)
chr6 (260-385)||(34748320-34748447)
chr6 (305-356)||(17225878-17225929)
chr6 (284-355)||(1485131-1485204)
chr6 (279-363)||(25195346-25195432)
chr6 (229-361)||(46218-46354)
chr6 (279-362)||(3482066-3482151)
chr6 (286-355)||(2234542-2234614)
chr6 (313-369)||(7952725-7952781)
chr6 (162-206)||(33141805-33141849)
chr6 (303-355)||(34027423-34027475)
chr6 (335-386)||(765424-765475)
chr6 (582-653)||(13687591-13687662)
chr6 (234-329)||(3289798-3289894)
chr6 (302-384)||(5724635-5724717)
chr6 (279-357)||(434217-434297)
chr6 (612-653)||(10874325-10874366)
chr6 (302-371)||(10874505-10874574)
chr6 (309-366)||(19601457-19601514)
chr6 (279-330)||(2748046-2748098)
chr6 (279-353)||(6653843-6653921)
chr6 (609-653)||(7486424-7486468)
chr6 (575-631)||(8092007-8092063)
chr6 (169-209)||(18690622-18690662)
chr6 (302-386)||(26280601-26280685)
[»] chr8 (20 HSPs)
chr8 (229-382)||(32927892-32928047)
chr8 (229-386)||(26100076-26100235)
chr8 (305-386)||(15677823-15677905)
chr8 (279-369)||(35495003-35495095)
chr8 (302-384)||(13384659-13384741)
chr8 (279-369)||(4662883-4662975)
chr8 (279-387)||(37684400-37684510)
chr8 (285-386)||(18355836-18355937)
chr8 (305-384)||(38868496-38868575)
chr8 (243-369)||(16972008-16972136)
chr8 (313-386)||(32994258-32994331)
chr8 (609-652)||(39648381-39648424)
chr8 (283-382)||(32767387-32767490)
chr8 (229-327)||(18356020-18356119)
chr8 (279-325)||(32101130-32101178)
chr8 (279-369)||(38335841-38335933)
chr8 (580-652)||(11791746-11791818)
chr8 (306-384)||(44141059-44141137)
chr8 (617-653)||(1836262-1836298)
chr8 (307-343)||(33114793-33114829)
[»] chr1 (29 HSPs)
chr1 (230-365)||(7524130-7524267)
chr1 (302-386)||(11049246-11049330)
chr1 (279-369)||(30557517-30557607)
chr1 (279-369)||(1514356-1514448)
chr1 (279-384)||(28083868-28083975)
chr1 (283-361)||(3016183-3016263)
chr1 (279-386)||(6021800-6021905)
chr1 (302-386)||(7790647-7790731)
chr1 (540-635)||(48832907-48833001)
chr1 (570-658)||(32088578-32088664)
chr1 (302-386)||(28287341-28287425)
chr1 (302-366)||(30850404-30850468)
chr1 (162-206)||(32088671-32088715)
chr1 (279-319)||(52059391-52059431)
chr1 (305-372)||(3416090-3416157)
chr1 (599-650)||(5407803-5407854)
chr1 (609-651)||(10324766-10324808)
chr1 (281-356)||(10324920-10324997)
chr1 (576-658)||(39289272-39289354)
chr1 (307-372)||(40662991-40663054)
chr1 (572-630)||(50845180-50845238)
chr1 (284-354)||(213522-213594)
chr1 (538-607)||(2099659-2099728)
chr1 (279-387)||(2099667-2099778)
chr1 (576-653)||(35592496-35592572)
chr1 (283-384)||(48548998-48549099)
chr1 (325-366)||(51500862-51500903)
chr1 (283-356)||(34915092-34915167)
chr1 (302-342)||(38797634-38797674)
[»] chr4 (30 HSPs)
chr4 (281-387)||(32818352-32818460)
chr4 (279-353)||(35065092-35065168)
chr4 (283-384)||(8604606-8604709)
chr4 (601-681)||(24921479-24921558)
chr4 (279-386)||(21691192-21691301)
chr4 (576-653)||(43628117-43628194)
chr4 (272-388)||(31012711-31012830)
chr4 (286-369)||(16551970-16552053)
chr4 (243-294)||(20712758-20712809)
chr4 (575-653)||(4014167-4014245)
chr4 (312-386)||(30357508-30357582)
chr4 (575-653)||(33560578-33560656)
chr4 (307-361)||(42971912-42971966)
chr4 (272-363)||(45011893-45011986)
chr4 (272-386)||(1616387-1616502)
chr4 (302-355)||(4243414-4243467)
chr4 (279-369)||(53713541-53713633)
chr4 (617-653)||(11271587-11271623)
chr4 (550-653)||(25319047-25319149)
chr4 (572-652)||(35995229-35995308)
chr4 (305-369)||(49138771-49138835)
chr4 (155-206)||(29728938-29728989)
chr4 (302-361)||(52965859-52965918)
chr4 (576-646)||(22683870-22683940)
chr4 (302-384)||(39386631-39386713)
chr4 (285-355)||(10185221-10185293)
chr4 (291-384)||(9064229-9064324)
chr4 (305-365)||(27967431-27967491)
chr4 (601-653)||(29904013-29904065)
chr4 (280-353)||(45694643-45694718)
[»] chr7 (14 HSPs)
chr7 (229-356)||(40491604-40491733)
chr7 (302-388)||(41386820-41386906)
chr7 (243-386)||(45557361-45557506)
chr7 (252-386)||(38123619-38123755)
chr7 (575-653)||(18349774-18349852)
chr7 (281-362)||(42816450-42816533)
chr7 (306-362)||(45997707-45997764)
chr7 (286-355)||(27571889-27571960)
chr7 (256-384)||(29842087-29842214)
chr7 (609-653)||(36271329-36271373)
chr7 (164-206)||(12306679-12306721)
chr7 (308-385)||(31625420-31625495)
chr7 (575-653)||(42675058-42675136)
chr7 (279-329)||(32295237-32295289)
[»] chr3 (19 HSPs)
chr3 (229-361)||(31708169-31708303)
chr3 (301-365)||(32523344-32523408)
chr3 (601-653)||(21513380-21513432)
chr3 (283-388)||(40147834-40147941)
chr3 (302-386)||(52364047-52364131)
chr3 (229-361)||(31013039-31013173)
chr3 (603-653)||(23290292-23290342)
chr3 (288-355)||(46853523-46853592)
chr3 (603-653)||(49634075-49634125)
chr3 (578-651)||(7298328-7298400)
chr3 (292-353)||(4526161-4526224)
chr3 (302-362)||(50550594-50550654)
chr3 (272-369)||(52141221-52141320)
chr3 (229-356)||(37334964-37335093)
chr3 (229-355)||(35264341-35264469)
chr3 (304-385)||(44771691-44771772)
chr3 (162-206)||(2410028-2410072)
chr3 (309-361)||(31492788-31492839)
chr3 (283-356)||(41596133-41596208)
[»] chr2 (27 HSPs)
chr2 (556-653)||(37561706-37561801)
chr2 (229-351)||(11759789-11759913)
chr2 (253-387)||(16518774-16518909)
chr2 (279-386)||(33019136-33019245)
chr2 (279-384)||(42740975-42741081)
chr2 (572-646)||(32827519-32827594)
chr2 (279-353)||(33502266-33502339)
chr2 (280-353)||(32596020-32596095)
chr2 (285-382)||(42982544-42982643)
chr2 (601-653)||(44810374-44810426)
chr2 (279-355)||(22536025-22536103)
chr2 (603-653)||(3654930-3654980)
chr2 (279-386)||(43501121-43501228)
chr2 (279-365)||(33047562-33047650)
chr2 (602-653)||(29823508-29823559)
chr2 (512-653)||(33502791-33502934)
chr2 (283-355)||(44439281-44439355)
chr2 (279-370)||(11504042-11504134)
chr2 (603-653)||(37402269-37402319)
chr2 (575-653)||(44439253-44439331)
chr2 (157-206)||(1101941-1101990)
chr2 (279-361)||(5533011-5533095)
chr2 (279-369)||(13912800-13912892)
chr2 (302-351)||(26032040-26032089)
chr2 (601-646)||(28028848-28028893)
chr2 (617-653)||(43073975-43074011)
chr2 (617-653)||(43501125-43501160)
[»] scaffold0361 (1 HSPs)
scaffold0361 (228-356)||(14043-14173)
[»] chr5 (22 HSPs)
chr5 (280-384)||(6951286-6951392)
chr5 (302-384)||(9818732-9818815)
chr5 (279-384)||(38845441-38845549)
chr5 (278-384)||(18851061-18851169)
chr5 (303-386)||(22572410-22572493)
chr5 (575-653)||(42439625-42439703)
chr5 (575-651)||(12432961-12433037)
chr5 (302-386)||(42858104-42858188)
chr5 (243-356)||(18637310-18637424)
chr5 (540-655)||(35439113-35439227)
chr5 (162-209)||(38592173-38592220)
chr5 (307-361)||(370743-370797)
chr5 (229-384)||(14299328-14299481)
chr5 (302-363)||(28110443-28110504)
chr5 (601-653)||(3970434-3970486)
chr5 (602-653)||(34195211-34195262)
chr5 (615-653)||(1102133-1102171)
chr5 (575-653)||(29923241-29923319)
chr5 (579-653)||(42194543-42194617)
chr5 (302-383)||(22226241-22226322)
chr5 (601-653)||(11599632-11599684)
chr5 (589-653)||(17862505-17862569)
[»] scaffold0168 (1 HSPs)
scaffold0168 (273-369)||(31839-31940)
[»] scaffold0024 (1 HSPs)
scaffold0024 (575-650)||(23601-23675)


Alignment Details
Target: chr6 (Bit Score: 608; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 18 - 706
Target Start/End: Complemental strand, 25196202 - 25195527
Alignment:
Q  18 actgaactagccgtaaaaataaaacctcgtcgggaaagccgccggagttggcctccgtctaccatcagcaacggtgagatttatcttgataagttcttat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  25196202 actgaactggccgtaaaaataaaacctcgtcgggaaagccgccggagttggcctccgtctaccatcagcaacggtgagat------------gttcttat 25196115  T
Q  118 gaagttagttatatcatttatgttcagtttcacattcaggagccaaaatttattttgataggtttggttgctctcaagtagaattgattctagtattgat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25196114 gaagttagttatatcatttatgttcagtttcacattcaggagccaaaatttattttgataggtttggttgctctcaagtagaattgattctagtattgat 25196015  T
Q  218 tatttgtatgtttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttgaactat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25196014 tatttgtatgtttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttgaactat 25195915  T
Q  318 aaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctgatttctgaaggcaaaatcaattttactagt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  25195914 aaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaatcaattctgatttctgaaggcaaaatcaattttactatt 25195815  T
Q  418 actcaaaaacaatcaaaacatgtcagaatcaattttggcccctctagtaatggagcaaacttaagtttgaatttgtgtgtttagttatgcagaattgatt 517  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25195814 actcaaaaacaa-ccaaacatgtcagaatcaattttggcccctctagtagtggagcaaacttaagtttgaatttgtgtgtttagttctgcagaattgatt 25195716  T
Q  518 ttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195715 ttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagt 25195616  T
Q  618 caaaagctacaaatcctagtttcaagttagaatcaaatttgcctcctccaaacttgaaaccaaaatttggttccacttctagaggaacc 706  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195615 caaaagctacagatcctagtttcaagttagaatcaaatttgcctcctccaaacttgaaaccaaaatttggttccacttctagaggaacc 25195527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 4911009 - 4910906
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 380  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| |||  || |||||||||||||||||||||| ||||| |||||| ||  ||||||    
T  4911009 tgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 4910910  T
Q  381 aatt 384  Q
    ||||    
T  4910909 aatt 4910906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 560 - 657
Target Start/End: Original strand, 10564917 - 10565014
Alignment:
Q  560 cattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaaattt 657  Q
    |||| |||||| ||| |||||||||||| || |||||  | |||||||| ||| ||||||||||||||||||||||  |||||||||||||| |||||    
T  10564917 catttacataaaaaaggagttgaacaataaactttagcgttaaaatcacattttgagtcaaaagctacaaatcctaacttcaagttagaatcgaattt 10565014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 273 - 384
Target Start/End: Complemental strand, 16540218 - 16540105
Alignment:
Q  273 aagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttt 370  Q
    |||| ||||||||||||||||||| ||||||  ||||||| |||||||||| |||  ||  || ||||||| | |||||||||||| ||||||||||||     
T  16540218 aagtggtttgtgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttc 16540119  T
Q  371 aatcagaatcaatt 384  Q
    ||  ||||||||||    
T  16540118 aagtagaatcaatt 16540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 355
Target Start/End: Original strand, 31305777 - 31305905
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 326  Q
    |||||| |||||| |||||||| |||||||  | ||||| || ||| |  ||| |||||||||| ||| ||||||  ||||||||| | ||||||||| |    
T  31305777 ttgattttgtaaaattgattccgactaaaagggtgttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgag 31305876  T
Q  327 tgtacaattcaattctagaatcaaaagct 355  Q
    |||| || |||||||||||||||||||||    
T  31305877 tgtataaatcaattctagaatcaaaagct 31305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 279 - 388
Target Start/End: Original strand, 6654070 - 6654181
Alignment:
Q  279 tttgtgtttggatacatttatgta--agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    ||||||||||||| | ||||||||  ||||  ||||||||||||||| |||||  || |||| |||||||| |||||||| |||||||||||| ||  ||    
T  6654070 tttgtgtttggattcgtttatgtagaagtggtttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtag 6654169  T
Q  377 aatcaattctga 388  Q
    ||| ||||||||    
T  6654170 aattaattctga 6654181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 260 - 385
Target Start/End: Complemental strand, 34621010 - 34620883
Alignment:
Q  260 tgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 357  Q
    |||||||| || |||||  ||| |||||||||||||||||||||  ||||||||||  ||||||||  ||||| || ||||||||||||||| |||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34620911  T
Q  358 aaatcctagctttaatcagaatcaattc 385  Q
     | | ||||||| |   |||||||||||    
T  34620910 gatttctagcttcatgtagaatcaattc 34620883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 260 - 385
Target Start/End: Complemental strand, 34748447 - 34748320
Alignment:
Q  260 tgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 357  Q
    |||||||| || |||||  ||| |||||||||||||||||||||  ||||||||||  ||||||||  ||||| || ||||||||||||||| |||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34748348  T
Q  358 aaatcctagctttaatcagaatcaattc 385  Q
     | | ||||||| |   |||||||||||    
T  34748347 gatttctagcttcatgtagaatcaattc 34748320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 17225929 - 17225878
Alignment:
Q  305 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 356  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  17225929 tgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagcta 17225878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 1485131 - 1485204
Alignment:
Q  284 gtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    ||||||||||| ||||||||  ||||||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  1485131 gtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 1485204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 25195346 - 25195432
Alignment:
Q  279 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 363  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||||| |  || |||||| |||||| |||| ||| ||||||    
T  25195346 tttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 25195432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 361
Target Start/End: Original strand, 46218 - 46354
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatg--taagtgagttgaactat--aaatttg 324  Q
    ||||||||||||| ||||||| |||||||| |||||||     |||||| ||||||||||||||||||  ||   |||||||||||| |||  |||||||    
T  46218 ttgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagttgaattataaaaatttg 46317  T
Q  325 tgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    | |||   | || ||||||||||||||||||| ||||    
T  46318 tttgttagaatctattctagaatcaaaagctacaaat 46354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 3482151 - 3482066
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 362  Q
    |||||||||| ||||||| ||||||  || |||||||||||||| ||||||||  || ||||||||| ||||||| |||| |||||    
T  3482151 tttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatc 3482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 2234614 - 2234542
Alignment:
Q  286 ttggatacatttatgtaa--gtgagttgaacta-taaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    ||||||||||||||||||  ||||||||||| | |||||||| ||||  || |||||||||||||||||||||    
T  2234614 ttggatacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagct 2234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 7952725 - 7952781
Alignment:
Q  313 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||||||  ||  ||||||||||||||||||||| ||||||| ||||    
T  7952725 actataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgctt 7952781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 33141849 - 33141805
Alignment:
Q  162 aaaatttattttgataggtttggttgctctcaagtagaattgatt 206  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  33141849 aaaattgattttgatatgtttggttgctctcaagtataattgatt 33141805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 34027423 - 34027475
Alignment:
Q  303 agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    |||||||||||  ||||||||| ||||| || |||||||||||||||||||||    
T  34027423 agtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 765424 - 765475
Alignment:
Q  335 tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||||||||    
T  765424 tcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattct 765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 653
Target Start/End: Complemental strand, 13687662 - 13687591
Alignment:
Q  582 aacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||| ||||| ||| |||||||||  ||||||| || ||||||||| |||||  ||||||||||||||||    
T  13687662 aacaataaatttgagtgtgaaaatcatatttggagacagaagctacaagtcctatcttcaagttagaatcaa 13687591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 3289894 - 3289798
Alignment:
Q  234 tctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgt 329  Q
    |||||||| |||||| | ||| ||| |||||||  |  |||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  3289894 tctgtaaaattgatttcgacttaaagtgagttgcagataaagtgatttgtgtttggatacatt-atgtaaaagtgagttgaattataaatttgtgtgt 3289798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 5724635 - 5724717
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    ||||||||| ||  ||| ||||||||||| || |||||| |||||| ||||| || |||||||||||| ||  ||||||||||    
T  5724635 aagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaatt 5724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 434217 - 434297
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 357  Q
    |||||||||||||| |||  |||||  |||||||||| | ||||||| ||| || || ||||||||| |||||||||||||    
T  434217 tttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaagctat 434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 653
Target Start/End: Original strand, 10874325 - 10874366
Alignment:
Q  612 tggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  10874325 tggagtcaaaagctacaaattattgtttcaagttagaatcaa 10874366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 10874574 - 10874505
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttta 371  Q
    |||||||||||||  ||| ||||  |||| || ||||||||||||||||||||| ||| | |||||||||    
T  10874574 aagtgagttgaacactaagtttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagcttta 10874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 19601457 - 19601514
Alignment:
Q  309 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 366  Q
    ||||||||||||||| | |||| || ||| || ||||||||||||||| |||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatcctag 19601514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 2748098 - 2748046
Alignment:
Q  279 tttgtgtttggatacatttatgtaa-gtgagttgaactataaatttgtgtgta 330  Q
    |||||||||||||| |||| | ||| |||| ||||||||||||||||||||||    
T  2748098 tttgtgtttggatagatttgtataaagtgaattgaactataaatttgtgtgta 2748046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 6653921 - 6653843
Alignment:
Q  279 tttgtgtttggatacatt--tatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 353  Q
    |||||||||||||||| |  |||||||  ||||||| |||||||||||||  |||  || |||||||||||||||||||    
T  6653921 tttgtgtttggatacaatcatatgtaaaagtgagttaaactataaatttgcatgtgaaactcaattctagaatcaaaag 6653843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 609 - 653
Target Start/End: Complemental strand, 7486468 - 7486424
Alignment:
Q  609 gtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||| ||||| ||||||||| ||||||||||||| ||||||    
T  7486468 gtttggaggcaaaaactacaaatcatagtttcaagttaaaatcaa 7486424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 631
Target Start/End: Original strand, 8092007 - 8092063
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaat 631  Q
    ||||||||||||| || |||||||| |||||||||||| ||  |||||| |||||||    
T  8092007 tgagttgaacaataaactttagtataaaaatcacgtttagacacaaaaggtacaaat 8092063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 18690622 - 18690662
Alignment:
Q  169 attttgataggtttggttgctctcaagtagaattgattcta 209  Q
    ||||||| | ||||||||||| |||||||||||||||||||    
T  18690622 attttgacatgtttggttgctttcaagtagaattgattcta 18690662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 26280685 - 26280601
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    ||||||||| ||||||||||||||  ||| || |||||| | ||||||||| ||| |||| ||||||| ||   |||||||||||    
T  26280685 aagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattct 26280601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 32928047 - 32927892
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 326  Q
    |||||| |||||| |||||||  ||||||| |||||||| ||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  32928047 ttgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtg 32927948  T
Q  327 tgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 382  Q
    |||| || | ||||||| |||||||||||| |||||||||||| ||  ||||||||    
T  32927947 tgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 229 - 386
Target Start/End: Original strand, 26100076 - 26100235
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 326  Q
    |||||| |||||| |||||||  |||||||| ||||||| || |||| | ||||||||||||| |||||||||||  ||||||||||| |||||||||||    
T  26100076 ttgattatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtg 26100175  T
Q  327 tgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||| || |||||| ||||||||||||||| |||||||||||| ||  |||| |||||||    
T  26100176 tgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattct 26100235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 15677823 - 15677905
Alignment:
Q  305 tgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| ||  ||||||||||||    
T  15677823 tgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattct 15677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 35495095 - 35495003
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||| ||| ||||||  || |||||||||||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||||    
T  35495095 tttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagctt 35495003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 13384659 - 13384741
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||  |||||| ||  ||||||||||    
T  13384659 aagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 4662883 - 4662975
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||||||| | | ||  | ||||||||||||| ||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  4662883 tttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagctt 4662975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 279 - 387
Target Start/End: Complemental strand, 37684510 - 37684400
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||| ||  |  || |||||| ||||||||||||| | |||||||| ||| ||  ||    
T  37684510 tttgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtag 37684411  T
Q  377 aatcaattctg 387  Q
    |||||||||||    
T  37684410 aatcaattctg 37684400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 18355836 - 18355937
Alignment:
Q  285 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 382  Q
    ||||||||||||| |||||  | |||||||||| |||||||||||  | || |||||| ||||||||||||  | |||||||||||| ||||||||||||    
T  18355836 tttggatacatttgtgtaaaagggagttgaactttaaatttgtgt--aaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaa 18355933  T
Q  383 ttct 386  Q
    ||||    
T  18355934 ttct 18355937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 38868575 - 38868496
Alignment:
Q  305 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    |||||||||||||||||||||||||  || |||||| ||||| ||||||||| ||||| |||||| ||  ||||||||||    
T  38868575 tgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 369
Target Start/End: Original strand, 16972008 - 16972136
Alignment:
Q  243 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaatt 340  Q
    |||||||  ||||||| |||||||| || ||| |  |||||||||| ||||||| ||||||  |||| |||||| |||||||||||| || || ||||||    
T  16972008 ttgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaatt 16972107  T
Q  341 ctagaatcaaaagctataaatcctagctt 369  Q
    ||| ||| |||| ||| |||| |||||||    
T  16972108 ctaaaattaaaaactacaaattctagctt 16972136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 32994258 - 32994331
Alignment:
Q  313 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    ||||||||||||||| || || ||||||||||| |||||||||| ||||| |||||| ||  ||||||||||||    
T  32994258 actataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattct 32994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 609 - 652
Target Start/End: Original strand, 39648381 - 39648424
Alignment:
Q  609 gtttggagtcaaaagctacaaatcctagtttcaagttagaatca 652  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  39648381 gtttggagtcaaaagctacaaatcctagcttaaagttagaatca 39648424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 382
Target Start/End: Complemental strand, 32767490 - 32767387
Alignment:
Q  283 tgtttggatacatttatgt----aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 378  Q
    |||||||||||||| ||||    ||||||||||||| ||||||||  ||||| || ||| |||| |||||||||||||| |||| |||||| || || ||    
T  32767490 tgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaatcaaaagctatgaatcttagcttcaagcataa 32767391  T
Q  379 tcaa 382  Q
    ||||    
T  32767390 tcaa 32767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 18356020 - 18356119
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 326  Q
    |||||| |||||||| ||||| |||||||| |||||||| || || |  |||| |||| |||||||||||| |||  |||||||||| ||||||||||||    
T  18356020 ttgattatgtaaatt-gattctaactaaaagtgagttgaaggtaagggggtttatgttcggatacatttatctaaacgtgagttgaattataaatttgtg 18356118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 32101178 - 32101130
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgt 325  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  32101178 tttgtgtgtggatacatttatgtaaaagtgagttgaactataaatttgt 32101130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 38335841 - 38335933
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||| ||||||||| ||||||  |||||||  | |||||||||||| ||| || ||||||||| |||||||||| | ||||| ||||||    
T  38335841 tttgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaaatcttagctt 38335933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 652
Target Start/End: Original strand, 11791746 - 11791818
Alignment:
Q  580 tgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatca 652  Q
    |||||| | ||||||||| | |||||||||||  || |||||||||||||||||||| || ||| ||||||||    
T  11791746 tgaacagtaaattttagtgtaaaaatcacgttgagactcaaaagctacaaatcctagcttgaaggtagaatca 11791818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 44141059 - 44141137
Alignment:
Q  306 gagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    ||||||||||||||| || |||||  || |||| ||||||||||||| ||| |||||||| ||| ||  ||||||||||    
T  44141059 gagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaatt 44141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 653
Target Start/End: Original strand, 1836262 - 1836298
Alignment:
Q  617 tcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  1836262 tcaaaagctacacatcctagcttcaagttagaatcaa 1836298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 33114829 - 33114793
Alignment:
Q  307 agttgaactataaatttgtgtgtacaattcaattcta 343  Q
    ||||||||||||||||||||||||| | |||||||||    
T  33114829 agttgaactataaatttgtgtgtacgaatcaattcta 33114793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 230 - 365
Target Start/End: Complemental strand, 7524267 - 7524130
Alignment:
Q  230 tgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgt 327  Q
    ||||||| |||| ||||||| |||||||| |||| | | || |||||  |||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  7524267 tgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgt 7524168  T
Q  328 gtacaattcaattctagaatcaaaagctataaatccta 365  Q
    ||| || ||||||||| |||||||||||| ||||||||    
T  7524167 gtaaaaatcaattctataatcaaaagctacaaatccta 7524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 11049330 - 11049246
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||||| |||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||| ||  |||||| |||||    
T  11049330 aagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattct 11049246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 30557607 - 30557517
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||||||| || |||  ||||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||||    
T  30557607 tttgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtgaaaa--tcaattctagaatcaaaaactacaaatcctagctt 30557517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 1514448 - 1514356
Alignment:
Q  279 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||||||| ||||||   |||||||||| ||||||||||||||| || |||||| || ||| |||||||| ||||||||||||    
T  1514448 tttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagctt 1514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 279 - 384
Target Start/End: Original strand, 28083868 - 28083975
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    |||||||||||||| ||| ||||||  ||||| ||||||  ||||||||||||| || | |||| ||||||||||||||| |||| ||||||| ||  ||    
T  28083868 tttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtag 28083967  T
Q  377 aatcaatt 384  Q
    ||||||||    
T  28083968 aatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 361
Target Start/End: Complemental strand, 3016263 - 3016183
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    |||||||||||||| ||||||  |||||||||||  ||||||| |||||| |  |||||||||||||||||||||| ||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaat 3016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 6021905 - 6021800
Alignment:
Q  279 tttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 378  Q
    ||||||||||||||||| ||   ||||||||||||| ||||| ||| ||||| || || ||| ||||||||||||||| | |||||||||| ||  ||||    
T  6021905 tttgtgtttggatacatgtaa--aagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaa 6021808  T
Q  379 tcaattct 386  Q
    || |||||    
T  6021807 tcgattct 6021800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 7790647 - 7790731
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    ||||||||||||| ||||||||||||||| || |||||| ||||||| ||| ||| ||||| || ||| ||  ||||||||||||    
T  7790647 aagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattct 7790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 635
Target Start/End: Complemental strand, 48833001 - 48832907
Alignment:
Q  540 aagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatccta 635  Q
    ||||||||| ||||  |||| |||||||||| |  |||||| || ||| ||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  48833001 aagtggtttatgttcggatatattcacataa-acgtgagttcaataataaatttgagtgtaaaaatcacatttggagtcaaaagctacaaatccta 48832907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 658
Target Start/End: Original strand, 32088578 - 32088664
Alignment:
Q  570 agaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaaatttg 658  Q
    |||| ||||||||||||| ||||| ||| | |||||||| |||  | |||||||||  ||||||||| |||||||||||||||| ||||    
T  32088578 agaagtgagttgaacaataaatttcagtgtaaaaatcactttt--aatcaaaagctcgaaatcctagcttcaagttagaatcaattttg 32088664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 28287341 - 28287425
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||| |||||||| ||||||||| ||||  || ||||||||| |||||||||||| ||||||| |||| ||  |||| |||||||    
T  28287341 aagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattct 28287425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 30850404 - 30850468
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 366  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||| |||| ||| |||||||||    
T  30850404 aagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctag 30850468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 32088715 - 32088671
Alignment:
Q  162 aaaatttattttgataggtttggttgctctcaagtagaattgatt 206  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||    
T  32088715 aaaattgattttgacatgtttggttgctctcaagtagaattgatt 32088671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 52059431 - 52059391
Alignment:
Q  279 tttgtgtttggatacatttatgtaagtgagttgaactataa 319  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  52059431 tttgtgtttgaatacatttatgtaagtgagttgaattataa 52059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 3416157 - 3416090
Alignment:
Q  305 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 372  Q
    |||||| ||||||||||||||||||| || ||||||||| ||| |||| ||| ||||| || ||||||    
T  3416157 tgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaa 3416090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 650
Target Start/End: Complemental strand, 5407854 - 5407803
Alignment:
Q  599 tgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaat 650  Q
    ||||||||| |||| |||||  |||||||||||||||| |||||||||||||    
T  5407854 tgaaaatcatgttttgagtccgaagctacaaatcctagcttcaagttagaat 5407803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 651
Target Start/End: Complemental strand, 10324808 - 10324766
Alignment:
Q  609 gtttggagtcaaaagctacaaatcctagtttcaagttagaatc 651  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  10324808 gtttggagtcaaaagctgcaaagcctagcttcaagttagaatc 10324766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 10324920 - 10324997
Alignment:
Q  281 tgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 356  Q
    ||||| |||||||||| ||||||  ||||||  ||| ||||||||| ||||| || |||||| |||||||||||||||    
T  10324920 tgtgtatggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagcta 10324997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 658
Target Start/End: Original strand, 39289272 - 39289354
Alignment:
Q  576 gagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaaatttg 658  Q
    ||||||||| || | ||| ||| | |||||||||||| || |||||||||| || | |||| |||||||||||||||| ||||    
T  39289272 gagttgaacgataagtttcagtgtaaaaatcacgttttgactcaaaagctaaaagttctagcttcaagttagaatcaattttg 39289354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 40662991 - 40663054
Alignment:
Q  307 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 372  Q
    ||||||| |||||||||||||||  |  |||||||| ||||||||||||| |||| ||||||||||    
T  40662991 agttgaattataaatttgtgtgttaa--tcaattcttgaatcaaaagctacaaatactagctttaa 40663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 630
Target Start/End: Complemental strand, 50845238 - 50845180
Alignment:
Q  572 aaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaa 630  Q
    |||||||||||||||| ||||| ||||| ||||| || ||||||| ||||| |||||||    
T  50845238 aaatgagttgaacaataaatttaagtataaaaattacatttggaggcaaaaactacaaa 50845180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 213522 - 213594
Alignment:
Q  284 gtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagc 354  Q
    |||||||| |||| ||||||  ||||||||||| | ||||||| || || || ||||||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagc 213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 607
Target Start/End: Original strand, 2099659 - 2099728
Alignment:
Q  538 aaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatca 607  Q
    ||||||| ||||||||| |||||||||| |||| ||||||||||| | || |||||  || |||||||||    
T  2099659 aaaagtgatttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatca 2099728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 2099667 - 2099778
Alignment:
Q  279 tttgtgtttggatacatttatgtaag---tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 375  Q
    |||||||||||||||||| || |||    |||||||| |||||||||| |||||  || ||||||||| || ||||| ||| |||||  ||||| ||| |    
T  2099667 tttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatcaattctataaccaaaatctacaaatctcagcttcaatta 2099766  T
Q  376 gaatcaattctg 387  Q
     |||||||||||    
T  2099767 caatcaattctg 2099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 35592572 - 35592496
Alignment:
Q  576 gagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||| ||| ||||| ||| | ||||| | |||| ||||||||||||| ||||||||| || |||||||||||||    
T  35592572 gagttgaagaataaatttaagtgtaaaaat-atgtttagagtcaaaagctaaaaatcctagctttaagttagaatcaa 35592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 48548998 - 48549099
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 380  Q
    ||||| |||||||||||||||  ||||||||||| ||||||  | || || || ||||||||||||||| |||||| || | ||||||| ||  ||||||    
T  48548998 tgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatc 48549095  T
Q  381 aatt 384  Q
    ||||    
T  48549096 aatt 48549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 51500862 - 51500903
Alignment:
Q  325 tgtgtacaattcaattctagaatcaaaagctataaatcctag 366  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctag 51500903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 34915167 - 34915092
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 356  Q
    |||||| ||||||| ||||||  |||||||||| |||||| | ||||||   | ||||||||||||||||||||||    
T  34915167 tgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagcta 34915092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 38797634 - 38797674
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattct 342  Q
    ||||||||||||||||||||||||||||  || ||||||||    
T  38797634 aagtgagttgaactataaatttgtgtgtgaaaatcaattct 38797674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 281 - 387
Target Start/End: Original strand, 32818352 - 32818460
Alignment:
Q  281 tgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 378  Q
    |||||||||||||||| ||||||  || |||||||||||||||||||||| | || |||||||||||||||||||||| |||| ||||||| ||  ||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaa 32818451  T
Q  379 tcaattctg 387  Q
    |||||||||    
T  32818452 tcaattctg 32818460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 35065168 - 35065092
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 353  Q
    |||||||||||||||||| ||||||  |||||| ||  |||||||||||||||| || |||||||||||||||||||    
T  35065168 tttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaag 35065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 8604606 - 8604709
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 380  Q
    |||||||||||||| ||||||  |||  || ||||||||||||||||||  || |||||||||||||| ||||||| ||||| |||||| ||  ||||||    
T  8604606 tgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatc 8604705  T
Q  381 aatt 384  Q
    ||||    
T  8604706 aatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 601 - 681
Target Start/End: Original strand, 24921479 - 24921558
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaaatttgcctcctccaaacttgaaaccaaa 681  Q
    ||||||| || || ||||||||||||||||| | ||||||||||||||||||| |||||||| | |||| |||||||||||    
T  24921479 aaaatcatgtatgaagtcaaaagctacaaattcaagtttcaagttagaatcaattttgcctcattcaaa-ttgaaaccaaa 24921558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 21691192 - 21691301
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    |||||||||||||| ||| ||||||  ||| ||||||||||||||||||||||  || ||||||||| || ||||||||| ||||| ||| || ||   |    
T  21691192 tttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttg 21691291  T
Q  377 aatcaattct 386  Q
    ||||||||||    
T  21691292 aatcaattct 21691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 43628194 - 43628117
Alignment:
Q  576 gagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||| ||||| | | | ||||||| |||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  43628194 gagttgaacaataaatttaaatgttaaaatcatgtttggagtcaaaatctacaaatcttagcttcaacttagaatcaa 43628117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 31012711 - 31012830
Alignment:
Q  272 aaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgt-acaattcaattctagaatcaaaagctataaatcctagct 368  Q
    ||||||||||||||||| |  |||||||||||   ||||||||||||||||| | ||||| | || ||||||||| ||| |||| ||| ||||||||| |    
T  31012711 aaagttgtttgtgtttgaacgcatttatgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagtt 31012810  T
Q  369 ttaatcagaatcaattctga 388  Q
    || |  ||||||||||||||    
T  31012811 ttgagtagaatcaattctga 31012830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 16552053 - 16551970
Alignment:
Q  286 ttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||   || ||||||||||||  |||| ||| ||||||||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaactaaaaactacaaatcctagctt 16551970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 20712758 - 20712809
Alignment:
Q  243 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggataca 294  Q
    |||||||| |||||||||||||||| || |||||| ||||||||||||||||    
T  20712758 ttgattccgactaaaaatgagttgaaggtaaagttatttgtgtttggataca 20712809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 653
Target Start/End: Complemental strand, 4014245 - 4014167
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||| || ||||||| | | ||||| ||||||||||||||||| |  ||||| ||| ||||||||||||||||    
T  4014245 tgagttgaaccataaattttactgtaaaaattacgtttggagtcaaaagatttaaatcatagcttcaagttagaatcaa 4014167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 30357582 - 30357508
Alignment:
Q  312 aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    ||||||||||||||||||| || |||||| || |||||||||||| |||||  ||||| ||  ||||||||||||    
T  30357582 aactataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattct 30357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 653
Target Start/End: Original strand, 33560578 - 33560656
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||||||||||| | ||| | |||||||| ||| || |||||||||||||||||||| ||   |||||||||||    
T  33560578 tgagttgaacaatgaatgtcagtttaaaaatcacttttagactcaaaagctacaaatcctagctttcggttagaatcaa 33560656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 42971912 - 42971966
Alignment:
Q  307 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    ||||||||||||||||||| |||| || ||||||||| || ||||||||||||||    
T  42971912 agttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaat 42971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 45011986 - 45011893
Alignment:
Q  272 aaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 363  Q
    ||||| ||||| ||||| ||||||| || |||  ||||||  || |||||||||||||||  || |||||||||||||||||||||| ||||||    
T  45011986 aaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatcc 45011893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 1616502 - 1616387
Alignment:
Q  272 aaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    ||||| ||||||||||| ||||||| ||||||   ||||||||||| ||||  |||||||   | |||||||||||||||||||||| ||||  |||| |    
T  1616502 aaagtggtttgtgtttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagc-t 1616404  T
Q  370 taatcagaatcaattct 386  Q
    |||  ||||||||||||    
T  1616403 taagtagaatcaattct 1616387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 4243467 - 4243414
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    |||||||| |||| ||||||||| ||||| || |||||||||||||||||||||    
T  4243467 aagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 53713541 - 53713633
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||| ||||| ||||||  ||||||||||||||| || | | |||  || |||||| ||||||||||||||| ||||| ||||||    
T  53713541 tttgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagctt 53713633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 653
Target Start/End: Original strand, 11271587 - 11271623
Alignment:
Q  617 tcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11271587 tcaaaagctacaaatcctagcttcaagttagaatcaa 11271623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 653
Target Start/End: Complemental strand, 25319149 - 25319047
Alignment:
Q  550 tgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaa-tcacgtttggagtcaaaagctacaaatcctagtttcaagttaga 648  Q
    ||||| |||||||| || ||| || ||||||||||||| ||||| ||||| |||| |||| ||| || ||||| |||||||||||||  |||||||||||    
T  25319149 tgtttcgatacatttacgtaa-aagtgagttgaacaataaatttcagtataaaaaatcacatttagactcaaa-gctacaaatcctaccttcaagttaga 25319052  T
Q  649 atcaa 653  Q
    |||||    
T  25319051 atcaa 25319047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 652
Target Start/End: Complemental strand, 35995308 - 35995229
Alignment:
Q  572 aaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatca 652  Q
    |||||||||||||||| ||||| ||| ||||||| | ||||| |||| ||| |||| ||||| || |||||||||||||||    
T  35995308 aaatgagttgaacaat-aatttgagtgtgaaaattaagtttgaagtctaaaactaccaatccgagcttcaagttagaatca 35995229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 49138771 - 49138835
Alignment:
Q  305 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||||  |||||| || || |||||| |||||||||||| || ||||||||||||    
T  49138771 tgagttgaactataagcttgtgtataaaaatcaattttagaatcaaaagttacaaatcctagctt 49138835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 29728938 - 29728989
Alignment:
Q  155 aggagccaaaatttattttgataggtttggttgctctcaagtagaattgatt 206  Q
    |||| |||||||| ||||||| | |||||||||||||| |||||||||||||    
T  29728938 aggatccaaaattgattttgacaagtttggttgctctcgagtagaattgatt 29728989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 52965859 - 52965918
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    |||||||||||| ||||||||| |||||   | |||||| ||||||||||||||||||||    
T  52965859 aagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaat 52965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 22683940 - 22683870
Alignment:
Q  576 gagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagtta 646  Q
    |||||||||||| ||||| | | | |||||||||||| || |||||||||||| ||| ||| |||||||||    
T  22683940 gagttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagtta 22683870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 39386713 - 39386631
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    |||||||||||||| ||||| |||||||  || |||||| |||||| ||| | |||||||  |||||||||  ||||||||||    
T  39386713 aagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaatt 39386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 10185293 - 10185221
Alignment:
Q  285 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    |||||||||||| ||||||  ||||||| ||| ||||||||| ||||| |  |||||| ||||||||||||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagct 10185221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 384
Target Start/End: Complemental strand, 9064324 - 9064229
Alignment:
Q  291 tacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    |||||||||||||  |||||||||||  |||| ||| ||||  || |||||||||||||||||| ||| |||| |||| || ||  ||||||||||    
T  9064324 tacatttatgtaaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 27967431 - 27967491
Alignment:
Q  305 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 365  Q
    |||||||||||||||||||||| ||| || |||||| | |||| ||||  |||||||||||    
T  27967431 tgagttgaactataaatttgtgcgtaaaagtcaattattgaataaaaaattataaatccta 27967491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 29904065 - 29904013
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||| |||||||||||||| ||||||   ||| ||||||||||||||||    
T  29904065 aaaatcacttttggagtcaaaagttacaaaatatagcttcaagttagaatcaa 29904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 45694718 - 45694643
Alignment:
Q  280 ttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 353  Q
    ||||||||||||||||| ||||||   |||||| |||||||||| |||||||   | ||||||||||||| |||||    
T  45694718 ttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaattaaaag 45694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 40491733 - 40491604
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 326  Q
    ||||||||||||| ||||||   ||||||| |||||||| || |||||  ||| | |||||||||||| ||||||  ||||||| |||| ||||||||||    
T  40491733 ttgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtg 40491634  T
Q  327 tgtacaattcaattctagaatcaaaagcta 356  Q
    |||| || ||||||||||||||||||||||    
T  40491633 tgtaaaagtcaattctagaatcaaaagcta 40491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 41386820 - 41386906
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctga 388  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||    
T  41386820 aagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctga 41386906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 45557506 - 45557361
Alignment:
Q  243 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaatt 340  Q
    |||||||  ||||||| |||||||| || |||||  |||||||||||||||||| ||||||  ||||||||| ||| ||||||||||||| || |||||     
T  45557506 ttgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatc 45557407  T
Q  341 ctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    ||||||| |||||||| | || |||||||  | || ||||||||||    
T  45557406 ctagaattaaaagctacagattctagcttctagcaaaatcaattct 45557361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 386
Target Start/End: Original strand, 38123619 - 38123755
Alignment:
Q  252 actaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatca 349  Q
    ||||||| |||||||| || |||||  |||||||| ||| ||||| ||||||  ||||||||| | ||||||||| ||||| || ||||||||||||| |    
T  38123619 actaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaatta 38123718  T
Q  350 aaagctataaatcctagctttaatcagaatcaattct 386  Q
     |||||| || | ||||||| ||  ||||||||||||    
T  38123719 gaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 653
Target Start/End: Complemental strand, 18349852 - 18349774
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||||||| ||||| ||| | ||||||||||||| |||||||||||||||| ||||  ||||| ||| ||||||    
T  18349852 tgagttgaacaataaatttgagtgtaaaaatcacgtttgaagtcaaaagctacaaaccctaacttcaaattaaaatcaa 18349774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 42816450 - 42816533
Alignment:
Q  281 tgtgtttggatacatttatgta--agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 362  Q
    |||||||| ||||||| |||||  ||||| ||||| |||||||||||||||  || ||||||||||||| ||||| ||||||||    
T  42816450 tgtgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 45997764 - 45997707
Alignment:
Q  306 gagttgaactataaatttgtgt-gtacaattcaattctagaatcaaaagctataaatc 362  Q
    |||||||||||||||||||||| ||| || | |||| |||||||||||||||||||||    
T  45997764 gagttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatc 45997707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 27571960 - 27571889
Alignment:
Q  286 ttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    ||||||||||||||||||  ||||||||||  ||||| ||| ||||  || |||||||||||||||||||||    
T  27571960 ttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagct 27571889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 384
Target Start/End: Complemental strand, 29842214 - 29842087
Alignment:
Q  256 aaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    |||||| ||||| || |||||  |||||||||||||| |||  |||||||||||||||||||| |  | |||||  || ||||||||||||| ||||||     
T  29842214 aaaatgggttgaaggtaaagtgatttgtgtttggatagattcgtgtaagtgagttgaactatataagtctgtgtgtaa-tcaattctagaattaaaagcc 29842116  T
Q  356 ataaatcctagctttaatcagaatcaatt 384  Q
    |  ||||||  ||||||  ||||||||||    
T  29842115 acgaatcctctctttaagtagaatcaatt 29842087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 36271329 - 36271373
Alignment:
Q  609 gtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||||    
T  36271329 gtttgtagtcaaaagctagaaatcctagtttcaaattagaatcaa 36271373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 12306679 - 12306721
Alignment:
Q  164 aatttattttgataggtttggttgctctcaagtagaattgatt 206  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
T  12306679 aattgattttgacatgtttggttgctctcaagtagaattgatt 12306721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 31625495 - 31625420
Alignment:
Q  308 gttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 385  Q
    ||||||||||||||||| ||| | |  |||||| || || |||| |||| |||||||||||||||| |||||||||||    
T  31625495 gttgaactataaatttgcgtgaaaa--tcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattc 31625420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 653
Target Start/End: Original strand, 42675058 - 42675136
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||| || |||| || | | ||||| | ||||||| |||||| |||| |||||||||| ||||||||||||||    
T  42675058 tgagttgaacgataaattctaatgtaaaaattatgtttggaatcaaaatctaccaatcctagttccaagttagaatcaa 42675136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 32295289 - 32295237
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgt 329  Q
    |||||||||  ||||||||||||||  |||||||||| |||||||||||||||    
T  32295289 tttgtgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgt 32295237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 229 - 361
Target Start/End: Original strand, 31708169 - 31708303
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 326  Q
    |||||| |||||| ||||||   ||||||| |||||||  |  ||||| ||||||||||||||||||| ||||||  |||||||||| ||||||||||||    
T  31708169 ttgattttgtaaaattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtg 31708268  T
Q  327 tgtacaattcaattctagaatcaaaagctataaat 361  Q
    |||   | |||||||||||||||||||||| ||||    
T  31708269 tgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 32523344 - 32523408
Alignment:
Q  301 taagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 365  Q
    |||||||||| |||| |||||||||||||| || |||||| ||||||||||||||| ||||||||    
T  32523344 taagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatccta 32523408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 21513380 - 21513432
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||||||||||||||||||||||||||| |  |||||| ||||||    
T  21513380 aaaatcacgtttggagtcaaaagctacaaatcctagctctaagttaaaatcaa 21513432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 388
Target Start/End: Original strand, 40147834 - 40147941
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 380  Q
    |||||||||||||| ||||||  ||||||||||  |||||||   ||||  || |||||||||||||||||||||  |||| ||||||| ||  ||||||    
T  40147834 tgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatc 40147933  T
Q  381 aattctga 388  Q
    ||||||||    
T  40147934 aattctga 40147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 52364131 - 52364047
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||||| |||||| ||  |||| |||||||    
T  52364131 aagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 229 - 361
Target Start/End: Complemental strand, 31013173 - 31013039
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgta--agtgagttgaactataaatttgtg 326  Q
    |||||||  |||| |||||||| ||||||| |||||||  |  |||||  ||||||||||||| |||| |||||  ||||||||||| | ||||||||||    
T  31013173 ttgattccataaaattgattccgactaaaagtgagttgtagataaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtg 31013074  T
Q  327 tgtacaattcaattctagaatcaaaagctataaat 361  Q
    |||   | ||||||||||| ||||| |||| ||||    
T  31013073 tgttagaatcaattctagattcaaaggctacaaat 31013039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 653
Target Start/End: Complemental strand, 23290342 - 23290292
Alignment:
Q  603 aatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||| |||||| | ||||||||||||||| ||||||||||||||||||||    
T  23290342 aatcatgtttgggggcaaaagctacaaatcatagtttcaagttagaatcaa 23290292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 46853523 - 46853592
Alignment:
Q  288 ggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    ||||| ||||||||||  ||||||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  46853523 ggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 653
Target Start/End: Original strand, 49634075 - 49634125
Alignment:
Q  603 aatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||| ||| ||| ||||||||||||||||||| ||||||||||||||||    
T  49634075 aatcacatttagaggcaaaagctacaaatcctagcttcaagttagaatcaa 49634125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 651
Target Start/End: Original strand, 7298328 - 7298400
Alignment:
Q  578 gttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatc 651  Q
    |||||||||| ||||| ||| | ||||||||| || || |||||| ||||||||||||| ||||||||||||||    
T  7298328 gttgaacaataaatttcagt-taaaaatcacgattagactcaaaaactacaaatcctagcttcaagttagaatc 7298400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 4526224 - 4526161
Alignment:
Q  292 acatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 353  Q
    ||||||||||||  ||| ||||||||||||||||||||||| || |||||| || |||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaag 4526161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 50550654 - 50550594
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 362  Q
    ||||||||  ||||||||||||||||||  || |||||| |||||||||||| ||||||||    
T  50550654 aagtgagtcaaactataaatttgtgtgtgaaaatcaattttagaatcaaaagttataaatc 50550594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 52141221 - 52141320
Alignment:
Q  272 aaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    ||||| ||||||||||  ||||||| || |||  |||||||||||||||| | |||||||  || | |||||||||||| || |||| ||||||||||||    
T  52141221 aaagtagtttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 37334964 - 37335093
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 326  Q
    |||||| | |||| |||||||| ||||||| |||||||| || |||||  ||| ||| || ||||||| || |||   |||||||||| || ||||   |    
T  37334964 ttgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaag 37335063  T
Q  327 tgtacaattcaattctagaatcaaaagcta 356  Q
    |||| || ||||||||||||||||||||||    
T  37335064 tgtaaaaatcaattctagaatcaaaagcta 37335093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 355
Target Start/End: Original strand, 35264341 - 35264469
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 326  Q
    ||||||||||||| ||||||  ||| |||| ||||||||  | |||||   || ||||||| |||||| ||||||   ||| |||||| ||||||||  |    
T  35264341 ttgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaag 35264440  T
Q  327 tgtacaattcaattctagaatcaaaagct 355  Q
    |||  || |||||||||||||||||||||    
T  35264441 tgttaaaatcaattctagaatcaaaagct 35264469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 44771772 - 44771691
Alignment:
Q  304 gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 385  Q
    ||||||||||||  |||||  |||||| || |||||| ||||||||||||||| |||| |||| ||||   |||||||||||    
T  44771772 gtgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattc 44771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 2410072 - 2410028
Alignment:
Q  162 aaaatttattttgataggtttggttgctctcaagtagaattgatt 206  Q
    |||||||||||||| | |||||| || ||||||||||||||||||    
T  2410072 aaaatttattttgacatgtttggatgttctcaagtagaattgatt 2410028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 31492839 - 31492788
Alignment:
Q  309 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  31492839 ttgaattataaatttgtgtgttaaat-caattctagaatcaaaagctacaaat 31492788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 41596133 - 41596208
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 356  Q
    |||||||||||||| ||| ||  ||||||  ||||||||| ||||||||| || ||||||||  ||||||||||||    
T  41596133 tgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagcta 41596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 653
Target Start/End: Complemental strand, 37561801 - 37561706
Alignment:
Q  556 gatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||||||||| |||  |||||||||||  |||| ||| | |||||||| |||| ||||||||| |||||||| ||||||||||||||||||||    
T  37561801 gatacattcacataacaaa--agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaaggtacaaatcgtagtttcaagttagaatcaa 37561706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 229 - 351
Target Start/End: Original strand, 11759789 - 11759913
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 326  Q
    |||||| |||||| ||||||   | ||||| |||||||| || ||| | ||||||||||| ||||| |||||||||  ||| |||||||||||||||||     
T  11759789 ttgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgtttgtatacacttatgtaagcgtgatttgaactataaatttgta 11759888  T
Q  327 tgtacaattcaattctagaatcaaa 351  Q
    |||| || |||||||||||||||||    
T  11759889 tgtaaaaatcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 253 - 387
Target Start/End: Complemental strand, 16518909 - 16518774
Alignment:
Q  253 ctaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaa 350  Q
    |||||| ||||||||||| ||| |  |||||||||||||||||| ||||  ||||||||||||||||||||||||| ||| || || ||  || ||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtc-atcttataatcaa 16518811  T
Q  351 aagctataaatcctagctttaatcagaatcaattctg 387  Q
    |||||| |||||||| |||  |  |||||||||||||    
T  16518810 aagctacaaatcctatcttctagtagaatcaattctg 16518774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 33019136 - 33019245
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||| |||||  || ||||||||| || ||||||||| |||| ||||||| ||  |     
T  33019136 tttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatat 33019235  T
Q  377 aatcaattct 386  Q
    ||||||||||    
T  33019236 aatcaattct 33019245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 42741081 - 42740975
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    |||||||||| ||||||| ||||||  |||||||| ||  |||||||| ||||| || |||||||||||||||||||||| ||||| |||||| ||  ||    
T  42741081 tttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtag 42740983  T
Q  377 aatcaatt 384  Q
    ||||||||    
T  42740982 aatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 646
Target Start/End: Complemental strand, 32827594 - 32827519
Alignment:
Q  572 aaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagc-tacaaatcctagtttcaagtta 646  Q
    ||||||||||||||||  |||| | ||||||||||||||||||| |||||||| || ||||||||| |||||||||    
T  32827594 aaatgagttgaacaatatatttgattatgaaaatcacgtttggaatcaaaagcttaaaaatcctagcttcaagtta 32827519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 33502339 - 33502266
Alignment:
Q  279 tttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 353  Q
    ||||||||||||||||||  |  |||||||||||||||||||| |||||||| || |||||| ||||||||||||    
T  33502339 tttgtgtttggatacattg-taaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaag 33502266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 32596095 - 32596020
Alignment:
Q  280 ttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 353  Q
    ||||||||||||| ||||||||||  |||||||||| ||| ||||||| |||| || |||||| ||||||||||||    
T  32596095 ttgtgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaag 32596020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 42982643 - 42982544
Alignment:
Q  285 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 382  Q
    |||||||||||| ||||||  |||||||| |  ||||||||||||||| || |||||||| ||||||||||||| || | ||||||| ||  ||||||||    
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 44810426 - 44810374
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||| |||||  ||||||||||||||||||||| ||||||||||||||||    
T  44810426 aaaatcatgtttgccgtcaaaagctacaaatcctagcttcaagttagaatcaa 44810374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 22536103 - 22536025
Alignment:
Q  279 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    |||||||||||||||||||||||  || |||||| |||||||||| |||||| | || | ||||||| |||||||||||    
T  22536103 tttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagct 22536025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 653
Target Start/End: Original strand, 3654930 - 3654980
Alignment:
Q  603 aatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||| ||||||||||||||| |||||||||||| || |||||||||||||    
T  3654930 aatcatgtttggagtcaaaaggtacaaatcctagcttgaagttagaatcaa 3654980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 43501228 - 43501121
Alignment:
Q  279 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 376  Q
    |||||||||| ||||||| ||||||   ||||||||| ||||| ||||||| || ||| |||||||| |||||||||||| ||||||||| || ||  ||    
T  43501228 tttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgt-tagaat-caattctaaaatcaaaagctacaaatcctagtttcaagtag 43501131  T
Q  377 aatcaattct 386  Q
    ||||||||||    
T  43501130 aatcaattct 43501121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 33047562 - 33047650
Alignment:
Q  279 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 365  Q
    |||||||||||||||||||||||  ||||||| |||||  ||||||| | |||  || ||| ||||| |||||||||||| ||||||||    
T  33047562 tttgtgtttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatcatttctaaaatcaaaagctacaaatccta 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 653
Target Start/End: Complemental strand, 29823559 - 29823508
Alignment:
Q  602 aaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||    
T  29823559 aaatcacatttggggtcaaaagctacaaatcttagattcaagtttgaatcaa 29823508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 653
Target Start/End: Original strand, 33502791 - 33502934
Alignment:
Q  512 ttgattttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattc-acata-agaaatgagttgaacaatgaattttagtatgaaaatcacg 609  Q
    ||||||||||||| ||||||| | | ||||||||||| |||||  |||||||  | ||  | |||||||||||||||| ||||||||| | | ||||||     
T  33502791 ttgattttgtaaaattgatttcacttaaaagtggtttatgtttgtatacattttatatgtaaaaatgagttgaacaataaattttagtgtaataatcaca 33502890  T
Q  610 tttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    | | || |||||| ||  |||| |||| ||||||||||||||||    
T  33502891 tctagactcaaaaacttgaaattctagcttcaagttagaatcaa 33502934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 44439355 - 44439281
Alignment:
Q  283 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 355  Q
    ||||||||||  |||||||||  ||||||||||| ||||||||| ||||  || |||||| ||||||||||||||    
T  44439355 tgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagct 44439281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 370
Target Start/End: Original strand, 11504042 - 11504134
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttt 370  Q
    |||||||||  ||||||| ||||||  |||||||||||||||| |||||||||  ||  |||||||| |||||||| ||| |||||||| ||||    
T  11504042 tttgtgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgt-gaaaacaattctataatcaaaaactacaaatcctaacttt 11504134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 653
Target Start/End: Original strand, 37402269 - 37402319
Alignment:
Q  603 aatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||| ||||| ||||||||||||||||| |||| ||||||||||| ||||    
T  37402269 aatcatgtttgaagtcaaaagctacaaattctagcttcaagttagagtcaa 37402319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 653
Target Start/End: Complemental strand, 44439331 - 44439253
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||||||| ||||| ||| | |||||||  ||| || ||||||||| |||||  ||| ||||||||||||||||    
T  44439331 tgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaa 44439253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 1101941 - 1101990
Alignment:
Q  157 gagccaaaatttattttgataggtttggttgctctcaagtagaattgatt 206  Q
    ||||||||||||||||||| |  ||||||||| ||| |||||||||||||    
T  1101941 gagccaaaatttattttgaaatttttggttgcactcgagtagaattgatt 1101990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 5533011 - 5533095
Alignment:
Q  279 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    ||||| ||||||||| || ||||||  |||||||||| ||||||||| |||||  || ||||||  |||||||||||||| ||||    
T  5533011 tttgtttttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaat 5533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 13912892 - 13912800
Alignment:
Q  279 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 369  Q
    |||||||||||||||| | ||||||   ||||||||||  |||||||||||||| || | ||||||||||| ||||  || |||| |||||||    
T  13912892 tttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagctt 13912800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 26032040 - 26032089
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaa 351  Q
    |||||||||||| ||||||||| ||||||||| ||||||  |||||||||    
T  26032040 aagtgagttgaagtataaatttatgtgtacaagtcaatttaagaatcaaa 26032089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 646
Target Start/End: Complemental strand, 28028893 - 28028848
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagtta 646  Q
    |||||||| |||| ||||||||||||||||| |||| |||||||||    
T  28028893 aaaatcacatttgtagtcaaaagctacaaattctagcttcaagtta 28028848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 653
Target Start/End: Complemental strand, 43074011 - 43073975
Alignment:
Q  617 tcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43074011 tcaaaagctacaaatcttagtttcaagttaaaatcaa 43073975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 653
Target Start/End: Complemental strand, 43501160 - 43501125
Alignment:
Q  617 tcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||||||||||||||||||||| |||||||||    
T  43501160 tcaaaagctacaaatcctagtttcaag-tagaatcaa 43501125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 14043 - 14173
Alignment:
Q  228 tttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt--aagtgagttgaactataaatttgt 325  Q
    ||||||| |||||| |||||||   ||| || |||||||| || |||||  ||| |||||||||||||| ||||  ||||||||||||  |||||||||     
T  14043 tttgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttga 14142  T
Q  326 gtgtacaattcaattctagaatcaaaagcta 356  Q
    ||||| || ||||||||||||||| ||||||    
T  14143 gtgtaaaaatcaattctagaatcataagcta 14173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 6951286 - 6951392
Alignment:
Q  280 ttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcaga 377  Q
    |||| |||||||| ||| ||||||  |||| ||||| ||||||||| ||||||||| |||||| ||||||||||||||| |||||||| ||| ||  |||    
T  6951286 ttgtatttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtaga 6951385  T
Q  378 atcaatt 384  Q
    |||||||    
T  6951386 atcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 9818815 - 9818732
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  9818815 aagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 38845549 - 38845441
Alignment:
Q  279 tttgtgtttggatacatttatgtaa---gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 375  Q
    |||||||||||||| ||| ||||||   ||||||| ||||||| ||||||||||  || |||||||||||||||||| ||| ||||| |||||| ||  |    
T  38845549 tttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagta 38845450  T
Q  376 gaatcaatt 384  Q
    |||||||||    
T  38845449 gaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 18851061 - 18851169
Alignment:
Q  278 gtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 375  Q
    |||||||||||||||  || ||||||  ||||||| |||||||||| |||||||  || ||||||||| |||||||||||| ||||| |||||| ||  |    
T  18851061 gtttgtgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagta 18851160  T
Q  376 gaatcaatt 384  Q
    |||||||||    
T  18851161 gaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 22572410 - 22572493
Alignment:
Q  303 agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    |||||||| |||||||||||||| | || |||||||||||| |||||||||||| |||||| ||||| ||  | ||||||||||    
T  22572410 agtgagttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattct 22572493  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 653
Target Start/End: Original strand, 42439625 - 42439703
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||| || || |||||| | |||||||||||| || |||||||||||| || |||| ||||||||||||||||    
T  42439625 tgagttgaacgataaaatttagtgtaaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaa 42439703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 651
Target Start/End: Original strand, 12432961 - 12433037
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatc 651  Q
    ||||||||||||| |||||  || |  ||||||||||| ||||||| || |||||||||||| ||||||||||||||    
T  12432961 tgagttgaacaataaatttgtgtgtagaaatcacgttttgagtcaacagatacaaatcctagcttcaagttagaatc 12433037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 42858188 - 42858104
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 386  Q
    ||||||||||||||||||||||||||||  || |||||| |||||| |||||||  |||||||| ||| ||  | ||||||||||    
T  42858188 aagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattct 42858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 18637424 - 18637310
Alignment:
Q  243 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt---aagtgagttgaactataaatttgtgtgtacaattcaat 339  Q
    ||||||| |||||||| ||||||||| | | |||  |||||||||||||| |||  | |   || |||||||||||||||||  ||||||| || |||||    
T  18637424 ttgattctaactaaaagtgagttgagagtacagtgatttgtgtttggatagattctttttaaaattgagttgaactataaat--gtgtgtaaaaatcaat 18637327  T
Q  340 tctagaatcaaaagcta 356  Q
    |||||||||||||||||    
T  18637326 tctagaatcaaaagcta 18637310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 655
Target Start/End: Complemental strand, 35439227 - 35439113
Alignment:
Q  540 aagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagttt 639  Q
    |||| |||| ||||| |||||||| || ||| |||||||||||||||| ||| | ||||| || || || |||||||||||||  ||||||| |||| ||    
T  35439227 aagttgtttatgtttggatacattaacgtaa-aaatgagttgaacaataaatgtgagtattaagattacatttggagtcaaaaagtacaaattctagctt 35439129  T
Q  640 caagttagaatcaaat 655  Q
    ||| ||||||| ||||    
T  35439128 caatttagaatgaaat 35439113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 38592173 - 38592220
Alignment:
Q  162 aaaatttattttgataggtttggttgctctcaagtagaattgattcta 209  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||    
T  38592173 aaaattgatattgatatgtttggttgctctcaagtagaattgattcta 38592220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 370743 - 370797
Alignment:
Q  307 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 361  Q
    ||||||| ||||||||||||||||||| |||||| || |||||||||||| ||||    
T  370743 agttgaagtataaatttgtgtgtacaaatcaattttaaaatcaaaagctacaaat 370797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 384
Target Start/End: Complemental strand, 14299481 - 14299328
Alignment:
Q  229 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa-gtgagttgaactataaatttgtgt 327  Q
    |||||| |||||| ||||||| |  ||||| |||||||| || |||||  |||||||||| |||||   |||||| |||| | ||||||||||||| |||    
T  14299481 ttgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttgaataca---atgtaaagtgaatcgaactataaatttatgt 14299385  T
Q  328 gtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 384  Q
    ||  ||  |||||||||||| |||| ||| |||||||| ||| ||  ||||||||||    
T  14299384 gtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 28110443 - 28110504
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 363  Q
    ||||||||| ||||||||||||||||||  || ||||||||| ||||||||| || ||||||    
T  28110443 aagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcc 28110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 3970434 - 3970486
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||| ||||||||||||||||||||| |||||| ||||  ||||||||||    
T  3970434 aaaatcaagtttggagtcaaaagctacaattcctagcttcagattagaatcaa 3970486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 653
Target Start/End: Complemental strand, 34195262 - 34195211
Alignment:
Q  602 aaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||||||| ||||| |||||||||||| || |||||| ||||||    
T  34195262 aaatcacgtttggagttaaaagatacaaatcctagcttaaagttaaaatcaa 34195211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 653
Target Start/End: Complemental strand, 1102171 - 1102133
Alignment:
Q  615 agtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  1102171 agtcaaaagctacaaatcctagcttcaagttaaaatcaa 1102133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 653
Target Start/End: Complemental strand, 29923319 - 29923241
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    |||||| |||| | ||||| ||| | |||||||||||| |||| |||| | ||||||| ||| ||||||||||||||||    
T  29923319 tgagttaaacattaaatttgagtgtaaaaatcacgttttgagttaaaaacgacaaatcttagcttcaagttagaatcaa 29923241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 653
Target Start/End: Original strand, 42194543 - 42194617
Alignment:
Q  579 ttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||||| ||||| ||| | |||| ||| ||| || |||||||||||||| ||||| |||| |||||||||||    
T  42194543 ttgaacaataaatttcagtgtaaaaaccacatttagactcaaaagctacaaaacctagcttcaggttagaatcaa 42194617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 22226241 - 22226322
Alignment:
Q  302 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaat 383  Q
    |||| ||| ||||| |||||||||||||| || | ||||||| |||||||||||| |||| ||| ||| ||  |||||||||    
T  22226241 aagttagtcgaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 11599684 - 11599632
Alignment:
Q  601 aaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||||| ||||||||| ||||| ||||| | ||| |||||||||||||||||    
T  11599684 aaaatcatgtttggagttaaaagttacaagttctaatttcaagttagaatcaa 11599632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 653
Target Start/End: Complemental strand, 17862569 - 17862505
Alignment:
Q  589 aattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaatcaa 653  Q
    ||||| ||| ||||||||||||||| | |||||||||||| ||  ||| ||||||||| ||||||    
T  17862569 aatttgagtgtgaaaatcacgtttgaattcaaaagctacatattatagcttcaagttaaaatcaa 17862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 31940 - 31839
Alignment:
Q  273 aagttgtttgtgtttggatacatttatgt--aagtgagttg---aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagc 367  Q
    |||| ||||||||||||||||||||||||  ||||||||||   |||||||||| ||| |||  || ||||||| | |||||||||||| ||||||||||    
T  31940 aagtggtttgtgtttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagc 31841  T
Q  368 tt 369  Q
    ||    
T  31840 tt 31839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 650
Target Start/End: Original strand, 23601 - 23675
Alignment:
Q  575 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacaaatcctagtttcaagttagaat 650  Q
    |||||||||  || ||||||||| | |||||||||| | || |||||||||||||||||||| ||| |||||||||    
T  23601 tgagttgaatgataaattttagtctaaaaatcacgtctagattcaaaagctacaaatcctagcttc-agttagaat 23675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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