View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_8 (Length: 668)

Name: NF7723_low_8
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_8
NF7723_low_8
[»] chr8 (2 HSPs)
chr8 (284-656)||(25588813-25589185)
chr8 (1-147)||(25589322-25589468)
[»] chr5 (2 HSPs)
chr5 (284-656)||(26374028-26374400)
chr5 (1-147)||(26374537-26374683)
[»] chr6 (8 HSPs)
chr6 (429-655)||(14127350-14127576)
chr6 (465-654)||(12917333-12917522)
chr6 (4-147)||(14126892-14127035)
chr6 (306-425)||(14127185-14127304)
chr6 (476-655)||(8758022-8758201)
chr6 (323-392)||(12927368-12927437)
chr6 (35-106)||(8758559-8758630)
chr6 (12-127)||(12927545-12927660)
[»] chr3 (5 HSPs)
chr3 (429-655)||(17918498-17918724)
chr3 (4-147)||(17919048-17919191)
chr3 (465-655)||(15428729-15428919)
chr3 (284-425)||(17918770-17918911)
chr3 (323-392)||(15429010-15429079)
[»] chr2 (3 HSPs)
chr2 (430-653)||(24081380-24081602)
chr2 (4-112)||(24080921-24081029)
chr2 (307-398)||(24081215-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (465-655)||(33319-33509)
scaffold0071 (323-392)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 284 - 656
Target Start/End: Complemental strand, 25589185 - 25588813
Alignment:
Q  284 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589185 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 25589086  T
Q  384 gaaagggagcaagtaaggttaagtggcgtagcttgtggtattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589085 gaaagggagcaagtaaggttaagtggcgtagcttgtggtattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 25588986  T
Q  484 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttga 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588985 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttga 25588886  T
Q  584 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588885 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 25588813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 25589468 - 25589322
Alignment:
Q  1 tcacaaaacttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589468 tcacaaaacttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaaga 25589369  T
Q  101 actgttgaatggattggaggatggtaagaatacggctgcagtaggag 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25589368 actgttgaatggattggaggatggtaagaatacggctgcagtaggag 25589322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 284 - 656
Target Start/End: Complemental strand, 26374400 - 26374028
Alignment:
Q  284 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 383  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374400 caatgagggaggtttttttgttttggagaaggaagaaatggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 26374301  T
Q  384 gaaagggagcaagtaaggttaagtggcgtagcttgtggtattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 483  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374300 gaaagggagcaagtaaggttaagtggcgtagcttgtgatattgaagatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgata 26374201  T
Q  484 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttga 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374200 atgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttga 26374101  T
Q  584 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374100 ttatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtcc 26374028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 26374683 - 26374537
Alignment:
Q  1 tcacaaaacttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaaga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374683 tcacaaaacttcagaaagctcttaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaaga 26374584  T
Q  101 actgttgaatggattggaggatggtaagaatacggctgcagtaggag 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26374583 actgttgaatggattggaggatggtaagaatacggctgcagtaggag 26374537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 429 - 655
Target Start/End: Original strand, 14127350 - 14127576
Alignment:
Q  429 gatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgc 528  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  14127350 gatgcacccaaggtgattggtgaagcaaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaagaggcgttggctaaattgc 14127449  T
Q  529 tgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttatt 628  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14127450 tgaatgggcaatttattccaattgttcaacagaaaatcattgatgctggctttgataatgttcgtgtagtacctagaggtggagataatgtgattttatt 14127549  T
Q  629 ttgccccggtaaagaagacatgatgtc 655  Q
    ||  |||||||||||||||||||||||    
T  14127550 ttttcccggtaaagaagacatgatgtc 14127576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 465 - 654
Target Start/End: Complemental strand, 12917522 - 12917333
Alignment:
Q  465 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaa 564  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| | |||||| ||||| ||||| ||||    
T  12917522 cgcaagtttatttccgataatgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctgaatggggactatattcctattgtgcaacaaaaaa 12917423  T
Q  565 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgt 654  Q
    ||||||||||||| |||||| || |||||||  ||||||||||||||||||||||| || | ||||| ||||| |||||||| |||||||    
T  12917422 tcattgatgctggttttgataatattcgtgtgttacctagaggtggagataatgtggttcttttttgtcccggcaaagaagatatgatgt 12917333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 14126892 - 14127035
Alignment:
Q  4 caaaacttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaact 103  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| ||     
T  14126892 caaaactacaaaaagctcttaataatgtttattttggtcagaataaagtttggacaaatgttgcatgctttgataggtttggtgaggttaaaaaagtacc 14126991  T
Q  104 gttgaatggattggaggatggtaagaatacggctgcagtaggag 147  Q
    ||||||||| |||||||||||||||||  |||||||||||||||    
T  14126992 gttgaatgggttggaggatggtaagaaatcggctgcagtaggag 14127035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 306 - 425
Target Start/End: Original strand, 14127185 - 14127304
Alignment:
Q  306 tcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaa 405  Q
    ||||||||||||||| ||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14127185 tcggagaaggaagaaatggtgttggttagaaaacacgcacttgagcaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagtaaggttaa 14127284  T
Q  406 gtggcgtagcttgtggtatt 425  Q
    ||||||||||| ||| ||||    
T  14127285 gtggcgtagctggtgatatt 14127304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 655
Target Start/End: Complemental strand, 8758201 - 8758022
Alignment:
Q  476 ttctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaatcattgatgct 575  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| | |||| ||||||| || ||||| ||   ||| ||||| ||||| |||||||      
T  8758201 ttctgataatgatgatgttgtttgggcaagtaaaggtgcgttggcaagagtgttgaatggagaatttataccttctgtgcaacaaaaaattattgatgtc 8758102  T
Q  576 ggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 655  Q
    || |||||| |||| || ||  | |||||||| ||  |||| ||| |||||||||| || || ||||| |||||||||||    
T  8758101 gggtttgataatgtccgggtgctgcctagagggggcaataacgtggttttattttgtccaggaaaagacgacatgatgtc 8758022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 12927437 - 12927368
Alignment:
Q  323 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 392  Q
    |||||||||||||||  | || |||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12927437 ggcgttggctagaaagcaggctcttgaacaggttaaattagatgctaaggttagtgaggaggaaagggag 12927368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 8758630 - 8758559
Alignment:
Q  35 ttttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgtt 106  Q
    |||||||| ||||| ||| ||||| |||||||| || |||||||||||||| || |||||||||||| ||||    
T  8758630 ttttggtccgaatagagtgtgggcaaatgttgcgcgttttgataggtttggagaagttaaaaaagaattgtt 8758559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 12927660 - 12927545
Alignment:
Q  12 cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg 111  Q
    ||||||||||| ||||||||||  || || ||| ||| ||| ||||||||| | ||||| ||||| |||||||| |||||||  || || |||||||| |    
T  12927660 cagaaagctcttaataatgtttcattaggccagtatagagtgtgggcgaatatcgcacgttttgacaggtttggggaggttaggaaggagctgttgaagg 12927561  T
Q  112 gattggaggatggtaa 127  Q
      ||||||||||||||    
T  12927560 agttggaggatggtaa 12927545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 429 - 655
Target Start/End: Complemental strand, 17918724 - 17918498
Alignment:
Q  429 gatgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgc 528  Q
    |||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17918724 gatgcacccaaggtgattggtgaagcaaaagtcacgcgcaagtatcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctacagtgc 17918625  T
Q  529 tgaatggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttatt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17918624 tgaatggggattttattccaattgttcaacagaaaatcattgatgttggctttgaaaatgttcgtgtagtacctagaggtggagataatgtgattttatt 17918525  T
Q  629 ttgccccggtaaagaagacatgatgtc 655  Q
    |||| ||||||||||||||||||||||    
T  17918524 ttgctccggtaaagaagacatgatgtc 17918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 17919191 - 17919048
Alignment:
Q  4 caaaacttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaact 103  Q
    ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  17919191 caaaactacagaaagctcttaataatatttattttggtcagaataaagtttgggcgaatgttgcacgctttgataagtttggtgaggttaaaacagaact 17919092  T
Q  104 gttgaatggattggaggatggtaagaatacggctgcagtaggag 147  Q
    ||||||||| |||||||||||||||||  |||||||||||||||    
T  17919091 gttgaatgggttggaggatggtaagaaaccggctgcagtaggag 17919048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 465 - 655
Target Start/End: Complemental strand, 15428919 - 15428729
Alignment:
Q  465 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaa 564  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||| | |||||| ||||| ||||||||||    
T  15428919 cgcaagtttgtttccgataacgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctaaatggggactgtattcctattgtgcaacagaaaa 15428820  T
Q  565 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 655  Q
    ||||||| ||||| |||||| ||||||| ||  |||||||||| |||||||||||| |||||||||| | ||| ||||| || ||||||||    
T  15428819 tcattgacgctggttttgataatgttcgggtgttacctagaggaggagataatgtggttttattttgtctcggcaaagatgatatgatgtc 15428729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 284 - 425
Target Start/End: Complemental strand, 17918911 - 17918770
Alignment:
Q  284 caatgagggaggtttttctgtttcggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggag 383  Q
    |||||| |||||| ||  || |||||||||||||||| |||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||    
T  17918911 caatgatggaggtattattgattcggagaaggaagaaatggcgttggctagaaaacgcgcacttgagcaagttaaattgaatgctaagggtagtgaggag 17918812  T
Q  384 gaaagggagcaagtaaggttaagtggcgtagcttgtggtatt 425  Q
    ||||||||||||||||||||||| |||| |||| ||| ||||    
T  17918811 gaaagggagcaagtaaggttaagcggcggagctggtgttatt 17918770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 15429079 - 15429010
Alignment:
Q  323 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 392  Q
    |||||||||||||||  | || ||||||||||||||||| ||||| || |  ||||||||||||||||||    
T  15429079 ggcgttggctagaaagcaggctcttgaacaggttaaattaaatgcgaatgagagtgaggaggaaagggag 15429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 430 - 653
Target Start/End: Original strand, 24081380 - 24081602
Alignment:
Q  430 atgcacccaaggtgaatggtgaagctaacgtcacgcgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgct 529  Q
    ||||| |||||||||||||||  || |  || |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| | |||| |    
T  24081380 atgcatccaaggtgaatggtggcgcaattgttacgcgcaagtttcattctgataatgatgatgttgtttgggcaagtaaagggt-gttggcaagagtgtt 24081478  T
Q  530 gaatggggattttattccaattgttcaacagaaaatcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattt 629  Q
    ||||| | | |||||||| ||| | ||||||||||||||||||||||| || ||| ||||||| ||  |||||||||| |||||||||| | ||||||||    
T  24081479 gaatgagaactttattcctattatgcaacagaaaatcattgatgctggtttcgataatgttcgggtgttacctagaggaggagataatgaggttttattt 24081578  T
Q  630 tgccccggtaaagaagacatgatg 653  Q
    || ||| |||||||||||||||||    
T  24081579 tgtccccgtaaagaagacatgatg 24081602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 24080921 - 24081029
Alignment:
Q  4 caaaacttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaact 103  Q
    ||||||| ||||||| ||| |||||||| | |||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||| |||||| |    
T  24080921 caaaactgcagaaagttctgaataatgtcttttttggtcagaataaagtgtgggaaaatgttgcatgctttgataggtttggtgaggttaagaaagaatt 24081020  T
Q  104 gttgaatgg 112  Q
    ||| |||||    
T  24081021 gttcaatgg 24081029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 24081215 - 24081306
Alignment:
Q  307 cggagaaggaagaattggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggagcaagta 398  Q
    |||||||||||||  ||| ||||||||||||  | |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  24081215 cggagaaggaagagatggtgttggctagaaagcaggcacttgagcaagttaaattgaatgctaagggtagtgaggaggaaagggagaaagta 24081306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 465 - 655
Target Start/End: Original strand, 33319 - 33509
Alignment:
Q  465 cgcaagtttcattctgataatgaagatgttgtttgggcaagtaaaggggcgttggctaaagtgctgaatggggattttattccaattgttcaacagaaaa 564  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||| | |||||| ||||| ||||||||||    
T  33319 cgcaagtttgtttccgataacgaagatgttgtttgggcaagtaaaggggcgtttgcaagagtgctaaatggggactgtattcctattgtgcaacagaaaa 33418  T
Q  565 tcattgatgctggctttgattatgttcgtgtagtacctagaggtggagataatgtgattttattttgccccggtaaagaagacatgatgtc 655  Q
    ||||||| ||||| |||||| ||||||| ||  |||||||||| |||||||||||| |||||||||| | ||| ||||| || ||||||||    
T  33419 tcattgacgctggttttgataatgttcgggtgttacctagaggaggagataatgtggttttattttgtctcggcaaagatgatatgatgtc 33509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 392
Target Start/End: Original strand, 33159 - 33228
Alignment:
Q  323 ggcgttggctagaaaatacgcacttgaacaggttaaattgaatgctaagggtagtgaggaggaaagggag 392  Q
    |||||||||||||||  | || ||||||||||||||||| ||||| || |  ||||||||||||||||||    
T  33159 ggcgttggctagaaagcaggctcttgaacaggttaaattaaatgcgaatgagagtgaggaggaaagggag 33228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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