View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7724_high_7 (Length: 323)
Name: NF7724_high_7
Description: NF7724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7724_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 42679288 - 42679534
Alignment:
| Q |
13 |
ttcaaccatcaaaaagataaacgcttatctttattgaacaagtagaatatcaaatcctttttctgttgaaaaatacaacagtttctttccttaatatcaa |
112 |
Q |
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| T |
42679288 |
ttcaaccatcaaaaagataaacgcttaactttatcgaacaagtaggatatcaaatcctttttctgttgaaaaatacaacagtttctttccttaatatcaa |
42679387 |
T |
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| Q |
113 |
atactaattttgaagaaacctcataaattgtacaaaatgatcggacagatccacaaagtggacgcatagcccttgcctagtgaataaattttagtttttt |
212 |
Q |
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| T |
42679388 |
ata---attttgaagaaacctcataaattgtacaaaatgatcggacagatccacaaagtggacgcatagcccttgcctagtgaataaattttagtttttt |
42679484 |
T |
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| Q |
213 |
caataaaatcatttgaacgtctaaaaattatgcatctttgacacatatta |
262 |
Q |
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| T |
42679485 |
caataaaatcatttgaacgtctaaaaattatgcatctttgacacatatta |
42679534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 42679560 - 42679605
Alignment:
| Q |
262 |
atatttgctctcttgagtggtcacttggttgaaatgtcatcttatt |
307 |
Q |
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| T |
42679560 |
atatttgctctcttgagtggtcacttggttgaaatgtcatcttatt |
42679605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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