View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7724_low_1 (Length: 986)

Name: NF7724_low_1
Description: NF7724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7724_low_1
NF7724_low_1
[»] chr5 (5 HSPs)
chr5 (10-436)||(33833360-33833786)
chr5 (558-654)||(21012013-21012110)
chr5 (559-657)||(29632594-29632693)
chr5 (558-657)||(21654546-21654646)
chr5 (559-606)||(10647749-10647796)
[»] chr3 (11 HSPs)
chr3 (558-654)||(32793231-32793328)
chr3 (558-654)||(50833604-50833701)
chr3 (558-654)||(50842152-50842249)
chr3 (559-607)||(50833760-50833808)
chr3 (559-607)||(50833825-50833873)
chr3 (559-607)||(50841980-50842028)
chr3 (559-607)||(50842045-50842093)
chr3 (564-658)||(16980972-16981067)
chr3 (558-606)||(9640245-9640293)
chr3 (559-610)||(1273697-1273748)
chr3 (560-610)||(48760757-48760807)
[»] chr2 (6 HSPs)
chr2 (558-657)||(13067156-13067256)
chr2 (559-654)||(40915477-40915573)
chr2 (560-657)||(15930903-15931001)
chr2 (665-778)||(13066994-13067106)
chr2 (559-606)||(4814603-4814649)
chr2 (559-632)||(9059877-9059950)
[»] chr1 (5 HSPs)
chr1 (561-657)||(48538558-48538655)
chr1 (559-654)||(24535404-24535500)
chr1 (560-657)||(39179965-39180063)
chr1 (665-778)||(48538705-48538817)
chr1 (144-243)||(21421818-21421917)
[»] chr4 (5 HSPs)
chr4 (559-654)||(50232993-50233089)
chr4 (559-657)||(42998638-42998737)
chr4 (559-657)||(42999231-42999330)
chr4 (559-605)||(1663573-1663619)
chr4 (557-606)||(37342026-37342074)
[»] chr7 (4 HSPs)
chr7 (559-647)||(18418404-18418493)
chr7 (559-653)||(18478630-18478725)
chr7 (559-607)||(23485480-23485527)
chr7 (558-605)||(24764952-24764999)
[»] scaffold0421 (1 HSPs)
scaffold0421 (559-657)||(4569-4668)
[»] chr8 (1 HSPs)
chr8 (561-641)||(5242685-5242766)
[»] chr6 (2 HSPs)
chr6 (559-657)||(7015465-7015564)
chr6 (562-653)||(5169674-5169766)
[»] scaffold0012 (1 HSPs)
scaffold0012 (141-226)||(146322-146407)
[»] scaffold0246 (1 HSPs)
scaffold0246 (563-617)||(11383-11438)
[»] scaffold0001 (1 HSPs)
scaffold0001 (141-242)||(134181-134281)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 33833786 - 33833360
Alignment:
Q  10 gagaagaaccgggtcaaaacaaaccaaacaaaaagagaaacatccaaatagtcaatggagagacaagcaatcaatcagaaaaataaatatagaaaatgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33833786 gagaagaaccgggtcaaaacaaaccaaacaaaaagagaaacatccaaatagtcaatggagagacaagcaatcaatcagaaaaataaatatagaaaatgac 33833687  T
Q  110 aataaatcagaagaatcaatatggagaacattacaagaaaactgcattttagtgtcggccaaaaacccactagatcagggtaaaaacagatgctaacaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  33833686 aataaatcagaagaatcaatatggagaacattacaagaaaattgcattttagtgtcggccaaaaacccactctatcagggtaaaaacggatgctaacaat 33833587  T
Q  210 gatttagcatcggattaacatcggggtcgggtgcgggctaaatagttaaagctaccaggtagcgtccgaggctaatttagtgacggcccggccgagttaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33833586 gatttagcatcggattaacatcggggtcgggtgcgggctaaatagttaaagctaccaggtagcgtccgaggctaatttagtgacggcccggccgagttaa 33833487  T
Q  310 agtccaactctaatctcattcgaaaaactcaattgaatcacttagaatcggaagaaccgactctaaagtcaaaattagaataaacaactaaatcctttag 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  33833486 agtccaactctaatctcattcgaaaaactcaattgaatcacttagaatcggatgaaccgactctaaaatcaaaattagaataaccaactaaatcctttag 33833387  T
Q  410 attcggctacaccaacgctaaatttaa 436  Q
    ||||||||||||| |||||||||||||    
T  33833386 attcggctacaccgacgctaaatttaa 33833360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 558 - 654
Target Start/End: Complemental strand, 21012110 - 21012013
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||||||||||    
T  21012110 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 21012013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 559 - 657
Target Start/End: Complemental strand, 29632693 - 29632594
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |  |||||||||||||||||||||| ||||||||||    
T  29632693 atcccttactccttaatgttattaggtttgcaaacacttaaccctaaaaatttccctctaaatctaatgcattaattgttgttagtgttgaccctaaaaa 29632594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 558 - 657
Target Start/End: Original strand, 21654546 - 21654646
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaaattt-ccctctaaaattggtgcattaattgttgttagtgttaaccctaaaa 656  Q
    ||||||||||||||||||||||||||||  |||| |||| ||||||| | ||| |||||||||  || |||||||||| |||||||||||||||||||||    
T  21654546 aatcccttactccttaatgttattaggtgtgcaaacactaaaccctacatttttccctctaaatctgatgcattaattattgttagtgttaaccctaaaa 21654645  T
Q  657 a 657  Q
    |    
T  21654646 a 21654646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 10647796 - 10647749
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaa 606  Q
    |||||||||||||||| ||| ||||||||||||  |||||||||||||    
T  10647796 atcccttactccttaaagttgttaggttagcaacaacttaaccctaaa 10647749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 558 - 654
Target Start/End: Complemental strand, 32793328 - 32793231
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||||||||||    
T  32793328 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 32793231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 558 - 654
Target Start/End: Complemental strand, 50833701 - 50833604
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| || || |||||||||||||||||||||||||||    
T  50833701 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctctctcaaaatgttgtattaattgttgttagtgttaaccctaa 50833604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 558 - 654
Target Start/End: Original strand, 50842152 - 50842249
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| || || |||||||||||||||||||||||||||    
T  50842152 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctctctcaaaatgttgtattaattgttgttagtgttaaccctaa 50842249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 50833760 - 50833808
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 607  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50833760 atcccttactctttaatgttattaggtttgcaaacacttaaccctaaaa 50833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 50833825 - 50833873
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 607  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50833825 atcccttactcgttaatgttattaggtttgcaaacacttaaccctaaaa 50833873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 50842028 - 50841980
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 607  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50842028 atcccttactcgttaatgttattaggtttgcaaacacttaaccctaaaa 50841980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 50842093 - 50842045
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 607  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  50842093 atcccttactctttaatgttattaggtttgcaaacacttaaccctaaaa 50842045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 564 - 658
Target Start/End: Original strand, 16980972 - 16981067
Alignment:
Q  564 ttactccttaatgttattaggttagcaatcacttaaccctaaaat-ttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaat 658  Q
    ||||||||||||||||||||||| |||||  |||||||||||||  ||  |||||||  |  |||||||| |  ||||||||||||||||||||||    
T  16980972 ttactccttaatgttattaggtttgcaattgcttaaccctaaaaaattttctctaaatctcatgcattaacttctgttagtgttaaccctaaaaat 16981067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 558 - 606
Target Start/End: Original strand, 9640245 - 9640293
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaa 606  Q
    ||||||||||||||||| ||| ||||||||||||  |||||||||||||    
T  9640245 aatcccttactccttaaagttgttaggttagcaacaacttaaccctaaa 9640293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 610
Target Start/End: Original strand, 1273697 - 1273748
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaattt 610  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||    
T  1273697 atcccttattcttaaatgttattaggtttgcaatcactaaaccctaaaattt 1273748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 560 - 610
Target Start/End: Original strand, 48760757 - 48760807
Alignment:
Q  560 tcccttactccttaatgttattaggttagcaatcacttaaccctaaaattt 610  Q
    ||||||||||||||  ||| ||||||||||||  |||||||||||||||||    
T  48760757 tcccttactccttagagttgttaggttagcaacaacttaaccctaaaattt 48760807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 558 - 657
Target Start/End: Complemental strand, 13067256 - 13067156
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaa 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||  |||||| ||||||||||||    
T  13067256 aatcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctaaaactggttcattaattgccgttagtattaaccctaaaa 13067157  T
Q  657 a 657  Q
    |    
T  13067156 a 13067156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 559 - 654
Target Start/End: Complemental strand, 40915573 - 40915477
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||| || || |||||||||||||||||||||||||||    
T  40915573 atcccttactccttaatgttgttaggttagcaatcacttaaccctaaaaaattccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 40915477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 560 - 657
Target Start/End: Complemental strand, 15931001 - 15930903
Alignment:
Q  560 tcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    ||||||| ||||||||||||||||||| |||| || |||||||| |||||||||||||||||    ||||||||||||| |||||| ||||||||||||    
T  15931001 tcccttattccttaatgttattaggtttgcaaacatttaaccctaaaaatttccctctaaaaccaatgcattaattgttcttagtgctaaccctaaaaa 15930903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 665 - 778
Target Start/End: Complemental strand, 13067106 - 13066994
Alignment:
Q  665 aacgtgccatttttatagaatgctgatacaatgaattgcatttatttgcgccaattgctgttcggtttggaaaacagaaaatctctccactcagcctcct 764  Q
    ||||||||||||| ||| | | ||||||||||||||||||||||||||| || | | || | | || |||||||||| ||||||||||||||||||||      
T  13067106 aacgtgccattttgataaatttctgatacaatgaattgcatttatttgcacctaattctatgccgtatggaaaacag-aaatctctccactcagcctctc 13067008  T
Q  765 ttttcggtttccaa 778  Q
    ||||| ||||||||    
T  13067007 ttttcagtttccaa 13066994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 4814603 - 4814649
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaa 606  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  4814603 atcccttactccttaattttattaggtt-gcaaacacttaaccctaaa 4814649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 9059950 - 9059877
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaa 632  Q
    ||||||||||||||||| |||||||||| ||||  |||||||||| |||||||  |||||||||||  |||||||    
T  9059950 atcccttactccttaatcttattaggtt-gcaacaacttaaccctaaaaatttgactctaaaattgcagcattaa 9059877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 5e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 561 - 657
Target Start/End: Original strand, 48538558 - 48538655
Alignment:
Q  561 cccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||  ||||||||||||||||||||    
T  48538558 cccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttccctctaaaactgtttcattaattgccgttagtgttaaccctaaaaa 48538655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 559 - 654
Target Start/End: Complemental strand, 24535500 - 24535404
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccc-taaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| || || |||||||||||||||||||||||||||    
T  24535500 atcccttactccttaatgttattaggttagcaatcacttaacccaaaaaatttccctctcaaaatgttgtattaattgttgttagtgttaaccctaa 24535404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 560 - 657
Target Start/End: Original strand, 39179965 - 39180063
Alignment:
Q  560 tcccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||  |  |||||||| ||||||| ||| ||||||||||||    
T  39179965 tcccttactccttaatgttattaggtttgcaaccactaaaccctaataatttccctctaaatcttttgcattaaatgttgttggtgataaccctaaaaa 39180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 665 - 778
Target Start/End: Original strand, 48538705 - 48538817
Alignment:
Q  665 aacgtgccatttttatagaatgctgatacaatgaattgcatttatttgcgccaattgctgttcggtttggaaaacagaaaatctctccactcagcctcct 764  Q
    ||||||||||||| ||| | | ||||||||||||||||||||||||||| || | | || | | || |||||||||| ||||||||||||||||||||      
T  48538705 aacgtgccattttgataaatttctgatacaatgaattgcatttatttgcacctaattctatgccgtatggaaaacag-aaatctctccactcagcctctc 48538803  T
Q  765 ttttcggtttccaa 778  Q
    ||||| ||||||||    
T  48538804 ttttcagtttccaa 48538817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 21421917 - 21421818
Alignment:
Q  144 aagaaaactgcattttagtgtcggccaaaaacccactagatcagggtaaaaacagatgctaacaatgatttagcatcggattaacatcggggtcgggtgc 243  Q
    |||||||| || |||||| ||||||||||||||||||  | | ||| |||||| || ||||| |||||  |||| |||||||| | |||| |||||||||    
T  21421917 aagaaaacagcgttttagagtcggccaaaaacccactctaactgggcaaaaactgacgctaagaatgaaatagcgtcggattagcgtcggtgtcgggtgc 21421818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 559 - 654
Target Start/End: Complemental strand, 50233089 - 50232993
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaa 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||| || || |||||||||||||||||||||||||||    
T  50233089 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaaatttctcgctcaaaatgttgtattaattgttgttagtgttaaccctaa 50232993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 559 - 657
Target Start/End: Complemental strand, 42998737 - 42998638
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa-tttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||  |  |||||||||||||||||||||||||||||||||    
T  42998737 atcccttactccttaatgttattaggtctgcaaacacttaaccctaaaaatttccctctaaatcttatgcattaattgttgttagtgttaaccctaaaaa 42998638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 559 - 657
Target Start/End: Complemental strand, 42999330 - 42999231
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    |||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||  |  ||||||||||| |||||||||||||||||||||    
T  42999330 atcccttactccttaatgttattaggtctgcaaacacttaaccctaaaaatttccctctaaatcttatgcattaattgctgttagtgttaaccctaaaaa 42999231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 559 - 605
Target Start/End: Complemental strand, 1663619 - 1663573
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaa 605  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  1663619 atcccttactccttaaagttgttaggttagcaacaacttaaccctaa 1663573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 606
Target Start/End: Complemental strand, 37342074 - 37342026
Alignment:
Q  557 gaatcccttactccttaatgttattaggttagcaatcacttaaccctaaa 606  Q
    ||||||||||||| ||||| |||||||||| ||||| |||||||||||||    
T  37342074 gaatcccttactcattaatcttattaggtt-gcaataacttaaccctaaa 37342026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 559 - 647
Target Start/End: Complemental strand, 18418493 - 18418404
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgtta 647  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| || || ||||||||||||||||||||    
T  18418493 atcccttactccttaatgttgttaggttagcaatcacttaaccctaaaaatttccctctcaaaatgttgtattaattgttgttagtgtta 18418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 559 - 653
Target Start/End: Original strand, 18478630 - 18478725
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaacccta 653  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||| ||||||||||||||  |  |||||||| ||||||| ||| ||||||||    
T  18478630 atcccttactccttaatgttattaggtttgcaactactaaaccctaataatttccctctaaatctattgcattaaatgttgttggtgataacccta 18478725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 23485480 - 23485527
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaaaa 607  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  23485480 atcccttactccttaattttattaggtt-gcaaacacttaaccctaaaa 23485527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 605
Target Start/End: Original strand, 24764952 - 24764999
Alignment:
Q  558 aatcccttactccttaatgttattaggttagcaatcacttaaccctaa 605  Q
    ||||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  24764952 aatcccttactccttaaagttgttaggttagcaacaacttaaccctaa 24764999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 559 - 657
Target Start/End: Original strand, 4569 - 4668
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    |||||||| ||||||||||||||||||| |||| |||||||| || |||||||||||||||||    ||||||||||||| |||||| ||||||||||||    
T  4569 atcccttattccttaatgttattaggtttgcaaacacttaactctaaaaatttccctctaaaaccaatgcattaattgttcttagtgctaaccctaaaaa 4668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 561 - 641
Target Start/End: Complemental strand, 5242766 - 5242685
Alignment:
Q  561 cccttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctctaaaattggtgcattaattgttgtta 641  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |  |||||||||||||||||    
T  5242766 cccttactccttaatgttattaggtttgcaaacacttaaccctaaaaatttccctctaaatctattgcattaattgttgtta 5242685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 559 - 657
Target Start/End: Original strand, 7015465 - 7015564
Alignment:
Q  559 atcccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaaccctaaaaa 657  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||||  |||||||||||||  |  || ||||| ||||||||||| ||| ||||||||    
T  7015465 atcccttactccttaatgttattaggtttgcaaccactaaaccctaattatttccctctaaatctattgtattaaatgttgttagtgataatcctaaaaa 7015564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 653
Target Start/End: Original strand, 5169674 - 5169766
Alignment:
Q  562 ccttactccttaatgttattaggttagcaatcacttaaccctaa-aatttccctctaaaattggtgcattaattgttgttagtgttaacccta 653  Q
    |||||||||||||| |||||||||| |||| |||| |||||||| ||||||||||||||  |  ||||||||  ||||| |||| ||||||||    
T  5169674 ccttactccttaatattattaggtttgcaaccactaaaccctaataatttccctctaaatctattgcattaaacgttgtcagtgataacccta 5169766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 146407 - 146322
Alignment:
Q  141 tacaagaaaactgcattttagtgtcggccaaaaacccactagatcagggtaaaaacagatgctaacaatgatttagcatcggatta 226  Q
    |||||||||||||| |||||| ||||||||||||||||||  |  |||| |||||| || ||||| | ||||||||  ||||||||    
T  146407 tacaagaaaactgcgttttagcgtcggccaaaaacccactctaaaagggaaaaaaccgacgctaatactgatttagagtcggatta 146322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 617
Target Start/End: Original strand, 11383 - 11438
Alignment:
Q  563 cttactccttaatgttattaggttagcaatcacttaaccct-aaaatttccctcta 617  Q
    ||||||||||||||||||||||||  ||| ||||||||| | ||||||||||||||    
T  11383 cttactccttaatgttattaggttttcaaacacttaaccttaaaaatttccctcta 11438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 134281 - 134181
Alignment:
Q  141 tacaagaaaactgcattttagtgtcggccaaaaacccactagatcagggtaaaaacagatgctaacaatgatttagcatcggattaacatcggggtcggg 240  Q
    |||||||||||  |||||||| ||||||| ||||||||||  | ||||  |||||| || ||||||| || |||||| |||||||| | |||| ||||||    
T  134281 tacaagaaaacaacattttagagtcggcc-aaaacccactctaacaggacaaaaactgacgctaacactgctttagcgtcggattagcgtcggtgtcggg 134183  T
Q  241 tg 242  Q
    ||    
T  134182 tg 134181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University