View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7724_low_4 (Length: 387)
Name: NF7724_low_4
Description: NF7724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7724_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 52034748 - 52035117
Alignment:
| Q |
1 |
acgaaaagctgaactgggccttcctaattggactactgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggatatcatacat |
100 |
Q |
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| T |
52034748 |
acgaaaagctgaactgggccttcctaattggactactgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggatatcatacat |
52034847 |
T |
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| Q |
101 |
tcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatatttaactatttt |
200 |
Q |
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| T |
52034848 |
tcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatatttaactatttt |
52034947 |
T |
|
| Q |
201 |
atccacaaatatcgtaagaagtggtgggagagatacaattatattcttgctgctgctttagatgctggattggctttcatgactactcttctatacttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034948 |
atccacaaatatcgtaagaagtggtgggagagatacaattatattcttgctgctgctttagatgctggattggctttcatgactactcttctatacttta |
52035047 |
T |
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| Q |
301 |
cggttagtagtggtggtataagtttgaattggtggggacaagatgagcattgtcctcttgctacatgtcc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52035048 |
cggttagtagtggtggtataagtttgaattggtggggacaagatgagcattgtcctcttgctacatgtcc |
52035117 |
T |
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