View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7724_low_6 (Length: 336)
Name: NF7724_low_6
Description: NF7724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7724_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 221768 - 221461
Alignment:
| Q |
12 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
221768 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
221669 |
T |
|
| Q |
112 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctctttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
221668 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctccttc |
221569 |
T |
|
| Q |
212 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
221568 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
221469 |
T |
|
| Q |
312 |
cattaatc |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
221468 |
cattaatc |
221461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 690923 - 690616
Alignment:
| Q |
12 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
690923 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
690824 |
T |
|
| Q |
112 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctctttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
690823 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctccttc |
690724 |
T |
|
| Q |
212 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
690723 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
690624 |
T |
|
| Q |
312 |
cattaatc |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
690623 |
cattaatc |
690616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 735391 - 735084
Alignment:
| Q |
12 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
735391 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
735292 |
T |
|
| Q |
112 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctctttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
735291 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctccttc |
735192 |
T |
|
| Q |
212 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
735191 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
735092 |
T |
|
| Q |
312 |
cattaatc |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
735091 |
cattaatc |
735084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 859287 - 858980
Alignment:
| Q |
12 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
859287 |
gagatgaaattagatcatttgttcaaagcaaatcatttagtttgttgagtactacacaagtggcattcgtgaatcaagaaatgcagtacataggattggg |
859188 |
T |
|
| Q |
112 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctctttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
859187 |
gatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatattctatacccttcctcttcaatctccttc |
859088 |
T |
|
| Q |
212 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
859087 |
cgaatcgatgacttgtatttcactgcactttgtcctttatatttcatactcctgccaaaaccaataaatatatattaaggttaaaagccttcacaaccat |
858988 |
T |
|
| Q |
312 |
cattaatc |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
858987 |
cattaatc |
858980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 4079733 - 4079819
Alignment:
| Q |
98 |
tacataggattggggatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatatt |
184 |
Q |
| |
|
||||||||||| |||| |||||| ||||| || || || | | |||||||||||| |||| ||||| |||||||||||||||||| |
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|
| T |
4079733 |
tacataggattagggagcttgaatgtacggtttccggaagagtttccttggagatcactccattggtcccctacatttccccatatt |
4079819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 4083882 - 4083968
Alignment:
| Q |
98 |
tacataggattggggatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatatt |
184 |
Q |
| |
|
||||||||||| |||| |||||| ||||| || || || | | |||||||||||| |||| ||||| |||||||||||||||||| |
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|
| T |
4083882 |
tacataggattagggagcttgaatgtacggtttccggaagagtttccttggagatcactccattggtcccctacatttccccatatt |
4083968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 4102189 - 4102275
Alignment:
| Q |
98 |
tacataggattggggatcttgaaagtacgattgcccaaacactccccttggagatcagtccactggtctcctacatttccccatatt |
184 |
Q |
| |
|
||||||||||| |||| |||||| ||||| || || || | | |||||||||||| |||| ||||| |||||||||||||||||| |
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|
| T |
4102189 |
tacataggattagggagcttgaatgtacggtttccggaagagtttccttggagatcactccattggtcccctacatttccccatatt |
4102275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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