View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_1 (Length: 444)
Name: NF7725_low_1
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 1644819 - 1644390
Alignment:
| Q |
1 |
tacaaagaaagatgcaccgtgcaagcttaattctcctttttgaatttttaaagcaaagtaagtgcatagaggcaacttgcaattaaaaaagcaagtagag |
100 |
Q |
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| T |
1644819 |
tacaaagaaagatgcaccgtgcaagcttaattctcgttttcgaatttttaaagcaaagtaagtgcatagaggcaacttgcaattaaaaaagcaagtagag |
1644720 |
T |
|
| Q |
101 |
acacctacgtggaggctaattgnnnnnnnaaaattttcaaagcacgataataatgaccataaaat-aaaaaattaagaagtataacccaaaaagaaagtt |
199 |
Q |
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| T |
1644719 |
acacctacgtggaggctaattgtttttttaaaattttcaaagcacaataataatgaccataaaataaaaaaattaagaagtataacccaaaaagaaagtt |
1644620 |
T |
|
| Q |
200 |
gttcttg--acaatatgttgtatcatannnnnnnnnnnnaatacaactacacctcatttggt-nnnnnnncaaatagaaatacacatcctcttcatagtg |
296 |
Q |
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| T |
1644619 |
gttcttgaaacaatatgttgtatcatattttttctttttaatgaaactacacctcatttggtataaaaaaaaaatagaaatacacaacctcttcatagtg |
1644520 |
T |
|
| Q |
297 |
aattgnnnnnnnnaacataataatcaaccaatacatggaaatggctggtgcagtaacggttgatcccattcctcttcttactccttacaaaatgggaaaa |
396 |
Q |
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| T |
1644519 |
aattgttttcttgaacataataatcaaccaatacatggaaatggctggtgcattaacggttgatcccattcctcttcttactccttacaagatgggaaaa |
1644420 |
T |
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| Q |
397 |
tttaatctatctcataggtatgtatgtata |
426 |
Q |
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| T |
1644419 |
tttaatctatctcataggtatgtatgtata |
1644390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 1045497 - 1045557
Alignment:
| Q |
357 |
tgatcccattcctcttcttactccttacaaaatgggaaaatttaatctatctcataggtat |
417 |
Q |
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| T |
1045497 |
tgatcccattcctcttcttactccttacaagatgggcaaattcaatctatctcataggtat |
1045557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 1069955 - 1070008
Alignment:
| Q |
364 |
attcctcttcttactccttacaaaatgggaaaatttaatctatctcataggtat |
417 |
Q |
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| T |
1069955 |
attcctcttcttactccttacaaaatgggtaaattcaatctatctcataggtat |
1070008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 1057604 - 1057664
Alignment:
| Q |
357 |
tgatcccattcctcttcttactccttacaaaatgggaaaatttaatctatctcataggtat |
417 |
Q |
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| T |
1057604 |
tgatccaattccacttctcactccttacaaaatgggaaaattcaatctatctcataggtat |
1057664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 1064666 - 1064726
Alignment:
| Q |
357 |
tgatcccattcctcttcttactccttacaaaatgggaaaatttaatctatctcataggtat |
417 |
Q |
| |
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| T |
1064666 |
tgatccaattcctcttcttactccttacaaaatgagaaaattcaatctagctcataggtat |
1064726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 1042912 - 1042964
Alignment:
| Q |
364 |
attcctcttcttactccttacaaaatgggaaaatttaatctatctcataggta |
416 |
Q |
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| T |
1042912 |
attcctcttcttacaccttacaagatgggtaaattcaatctagctcataggta |
1042964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 1032478 - 1032537
Alignment:
| Q |
357 |
tgatcccattcctcttcttactccttacaaaatgggaaaatttaatctatctcataggta |
416 |
Q |
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| T |
1032478 |
tgatcccattcctcttcttacaccttacaagatgggcaatttcagtctctctcataggta |
1032537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 1049014 - 1049073
Alignment:
| Q |
357 |
tgatcccattcctcttcttactccttacaaaatgggaaaatttaatctatctcataggta |
416 |
Q |
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|||||| |||||||||||||| | |||||| ||||| ||||| |||||| |||||||||| |
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| T |
1049014 |
tgatccaattcctcttcttacacattacaagatgggcaaattcaatctagctcataggta |
1049073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 1051801 - 1051860
Alignment:
| Q |
357 |
tgatcccattcctcttcttactccttacaaaatgggaaaatttaatctatctcataggta |
416 |
Q |
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||||||||||||||||||||| |||||||| ||||| || || | ||| ||||||||||| |
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| T |
1051801 |
tgatcccattcctcttcttacaccttacaagatgggcaatttcagtctctctcataggta |
1051860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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