View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_15 (Length: 239)
Name: NF7725_low_15
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39370051 - 39369830
Alignment:
| Q |
18 |
aagagaacattttttaatcacttataatacaaaaactgtcgctttgttttcatttcgttctgtttccaaagatttgtcgcattattttcattttgctttc |
117 |
Q |
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| T |
39370051 |
aagagaacattttttaatcacttataatacaaaaactgtcgctttgttttcatttcgttctgtttccaatgatttgtcgcattattttcattttgctttc |
39369952 |
T |
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| Q |
118 |
tgtttccaaagatttgtaccagaaagggtgaaaacaatgtgctggtcttgtagttaaaagtgaaaacacaaaataaaaatagaaattgttttctcaaatc |
217 |
Q |
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| T |
39369951 |
tgtttccaaagatttgtaccagaaagggtgaaaacaatgtgctggtcttgtagttaaaagtgaaaacacaaaataaaaatagaaattgttttctcaaatc |
39369852 |
T |
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| Q |
218 |
aaactaatcattctattttgtt |
239 |
Q |
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| T |
39369851 |
aaactaatcattctattttgtt |
39369830 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 13342415 - 13342372
Alignment:
| Q |
92 |
tgtcgcattattttcattttgctttctgtttccaaagatttgta |
135 |
Q |
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| T |
13342415 |
tgtcgcattgttttcattttgctttctgtttacaaagatttgta |
13342372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 35657710 - 35657646
Alignment:
| Q |
91 |
ttgtcgcattattttcattttgctttctgtttccaaagatttgtaccagaaagggtgaaaacaat |
155 |
Q |
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| T |
35657710 |
ttgtcgccttgttttcattttgttttctgtatccaaatatttgtttaggaaagggtgaaaacaat |
35657646 |
T |
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