View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7725_low_16 (Length: 226)
Name: NF7725_low_16
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_16 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 870269 - 870065
Alignment:
| Q |
18 |
agcatggccattgtttgctgaacaaaagatgaatgcagctttgttaagtgatggtttgaaagtggctattaggccaaaagttaatgagaaaggtgtagtt |
117 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||| |
|
|
| T |
870269 |
agcatggccactctttgctgaacaaaagatgaatgcagctttgttaagtgatggtttgaaagtggctattagacctaaagttaatgagaatggtatagtg |
870170 |
T |
|
| Q |
118 |
taaagggaagagatagctaaggttgtaaagaatctaatggttggtgaagatggagaggaaaggaaattc-cccaaagaatggaaaagttgaaaggtgatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
870169 |
gaaagggaagagatagctaaggttgtaaagaatttgatggttggtgaaga-----aggaaaggaaattcacccaaagaatggaaaagttgaaaggtaatg |
870075 |
T |
|
| Q |
217 |
ccattgatgc |
226 |
Q |
| |
|
| |||||||| |
|
|
| T |
870074 |
ctattgatgc |
870065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 844985 - 844782
Alignment:
| Q |
18 |
agcatggccattgtttgctgaacaaaagatgaatgcagctttgttaagtgatggtttgaaagtggctattaggccaaaagttaatgagaaaggtgtagtt |
117 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||| |
|
|
| T |
844985 |
agcatggccactctttgctgaacaaaagatgaatgcagttttgttaagtgatggtttgaaagtggctattagacctaaagttaatgagaatggtatagtg |
844886 |
T |
|
| Q |
118 |
taaagggaagagatagctaaggttgtaaagaatctaatggttggtgaagatggagaggaaaggaaattccccaaagaatggaaaagttgaaaggtgatgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
844885 |
gaaagggaagagatagctaaggttgtaaagaatttaatggttggtgaaga-----aggaaaggaaattcatcaaagaatggaaaagttgaaaggtaatgc |
844791 |
T |
|
| Q |
218 |
cattgatgc |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
844790 |
tattgatgc |
844782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 566296 - 566218
Alignment:
| Q |
148 |
aatctaatggttggtgaagatggagaggaaaggaaattccccaaagaatggaaaagttgaaaggtgatgccattgatgc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
566296 |
aatctaatggttggtgaagatggagaggaaaggaaattcgccaaagaatggaaaagttgaaaggtgatgccattgatgc |
566218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 16491000 - 16491085
Alignment:
| Q |
19 |
gcatggccattgtttgctgaacaaaagatgaatgcagctttgttaagtgatggtttgaaagtggctattaggccaaaagttaatga |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || |||| |||||||| ||||||||||| | || ||||||| |||||| |
|
|
| T |
16491000 |
gcatggccattgtttgctgaacaagggatgaatgctactatgttgtgtgatggtgtgaaagtggctttgagaccaaaagctaatga |
16491085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University