View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_17 (Length: 217)
Name: NF7725_low_17
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_17 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32183432 - 32183220
Alignment:
| Q |
1 |
ctactgaaattaagggaagatgtgtacctcatggaaaactagtggtatagaatttgaatcagcttgcaatttacttccacttagttcctgcaaaggaaca |
100 |
Q |
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| T |
32183432 |
ctactgaaattaagggaagatgtgtacctcatggaaaactagtggtatagaatttgaatcagcttgcaatttacttccacttagttcctgcaaaggaaca |
32183333 |
T |
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| Q |
101 |
actttctttagccattgtagattaattatctatgtgaaattgatcacaacgttcaaacctggataaagaagnnnnnnnnctaatctaacaactaactact |
200 |
Q |
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| T |
32183332 |
actttctttagctattgtag----attatctatgtgaaattgatcacaacgttcaaacccggataaagaagaaaaaaaactaatctaacaactaactact |
32183237 |
T |
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| Q |
201 |
aatatttgccattcaaa |
217 |
Q |
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||||||||||||||||| |
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| T |
32183236 |
aatatttgccattcaaa |
32183220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 32398798 - 32398831
Alignment:
| Q |
180 |
ctaatctaacaactaactactaatatttgccatt |
213 |
Q |
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| T |
32398798 |
ctaatctaacaactaattactaatatttgccatt |
32398831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 31939660 - 31939697
Alignment:
| Q |
180 |
ctaatctaacaactaactactaatatttgccattcaaa |
217 |
Q |
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| T |
31939660 |
ctaatctaacaactaattactaatatttgtcattcaaa |
31939697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 50574775 - 50574738
Alignment:
| Q |
180 |
ctaatctaacaactaactactaatatttgccattcaaa |
217 |
Q |
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|||||||||||||||| |||||| |||||||||||||| |
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| T |
50574775 |
ctaatctaacaactaattactaacatttgccattcaaa |
50574738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 40208181 - 40208217
Alignment:
| Q |
181 |
taatctaacaactaactactaatatttgccattcaaa |
217 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
40208181 |
taatctaacaactaactactaatatttatcattcaaa |
40208217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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