View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7725_low_2 (Length: 435)
Name: NF7725_low_2
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_2 |
 | |
|
| [»] scaffold0209 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 23 - 417
Target Start/End: Complemental strand, 20422768 - 20422373
Alignment:
| Q |
23 |
ttatgtcccgtgactagaagcccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttattttacacaaataagcaaaaaat |
122 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20422768 |
ttatgtcccctgactagaagtccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttattttacacaaataagcaaaaaat |
20422669 |
T |
|
| Q |
123 |
acttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttaaaaactaacaactaataccactttatattactaatttatgtcaattac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20422668 |
acttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttaaaaactaacaactaataccactttatattactaatttatgtcaattac |
20422569 |
T |
|
| Q |
223 |
tatataatatccttgtgtaaatcaaattgaataagacttctatcaaatgatgcaaatgtcagaaggaacacagtctggtatcatctaagtggctatgtgg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20422568 |
tatataatatccttgtgtaaatcaaattgaataagacttctatcaaatgatgcaaatgtcagaaggaacacagtctggtatcatctaagtggctatgtgg |
20422469 |
T |
|
| Q |
323 |
aatacattgccaatattataaactggaattgtaatatgcctataaggtgccagagtatcttaattagaa-ttctcttaaactttctaatgaataga |
417 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20422468 |
aatacagtgccaatattataaactggaattgtaatatgcctataaggtgccagagtatcttaattagaatttctcttaaactttctaatgaataga |
20422373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 9883427 - 9883715
Alignment:
| Q |
23 |
ttatgtcccgtgactagaagcccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttattttacacaaataagcaaaaaat |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9883427 |
ttatgtcccctgactagaagcccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttgttttacacaaataagcaaaaaat |
9883526 |
T |
|
| Q |
123 |
acttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttaaaaactaacaactaataccactttatattactaatttatgtcaattac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9883527 |
acttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttagaaactaacaactaataccactttatattactaatttatgtcaattac |
9883626 |
T |
|
| Q |
223 |
tatataatatccttgtgtaaatcaaattgaataagact----tctatcaaatgatgcaaatgtcagaaggaacacagtctggtatcatc |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9883627 |
tatataatatccttgtgtaaatctaattgaataagactgctatatatcaaatgatgcaaatgtcagaaggaacacagtctggtatcatc |
9883715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 9883716 - 9883806
Alignment:
| Q |
332 |
ccaatattataaactggaattgtaatatgcctataaggtgc----cagagtatcttaattagaa-ttctcttaaactttctaatgaataga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9883716 |
ccaatattataaactggaattgtaatatgcctataaggtgccatgcagagtatcttaattagaatttctcttaaactttctaatgaataga |
9883806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 16493 - 16398
Alignment:
| Q |
23 |
ttatgtcccgtgactagaagcccttcccttttatag--taaaacaattggtatggtattctagaagtggttatggtttattttacacaaataagca |
116 |
Q |
| |
|
||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
16493 |
ttatgtcccctaaccagaagcccttcccttttatagagtaaaacaattggtatggtattctagaagtgattctggtttgttttacacaaataagca |
16398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 19534 - 19629
Alignment:
| Q |
23 |
ttatgtcccgtgactagaagcccttcccttttatag--taaaacaattggtatggtattctagaagtggttatggtttattttacacaaataagca |
116 |
Q |
| |
|
||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
19534 |
ttatgtcccctaaccagaagcccttcccttttatagagtaaaacaattggtatggtattctagaagtgattctggtttgttttacacaaataagca |
19629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 352
Target Start/End: Complemental strand, 56542898 - 56542711
Alignment:
| Q |
164 |
tccttgtgttaaaaactaacaactaataccactttatattactaatttatgtcaattactatataata-tccttgtgtaaatcaaattgaataagacttc |
262 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||||| |||||||| ||||||||||||||| | | || |||| |||| |||| ||||||||| |
|
|
| T |
56542898 |
tccttgtgttagaaacaaacaactaatacctctttatactactaattcatgtcaattactatacatcacaactagtgtgaatctaattcaataagactgt |
56542799 |
T |
|
| Q |
263 |
tatcaaatgatgcaaatgtcagaaggaacacagtctggtatcatctaagtggctatgtggaatacattgccaatattataaactggaatt |
352 |
Q |
| |
|
|| |||||||||||||||||||| || |||| ||||||||||| | |||||||| |||| ||| ||||||||| ||||||||||| |
|
|
| T |
56542798 |
taccaaatgatgcaaatgtcagacggtgaacag--tggtatcatctgaatggctatgcggaacacaacgccaatattggaaactggaatt |
56542711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University