View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_3 (Length: 414)
Name: NF7725_low_3
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 173 - 402
Target Start/End: Complemental strand, 20132094 - 20131865
Alignment:
| Q |
173 |
gatcgtataatagacattggcccatcactgtgaaagaggtaatccataaaaatatattcaatttcaagagataaaaagaaacaaactattgtcatggaca |
272 |
Q |
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| T |
20132094 |
gatcgtataatagacattggcccatcactgtgaaagaggtaatccataaaaatatattcaatttcaagagataaaaagaaacaaactattgtcatggaca |
20131995 |
T |
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| Q |
273 |
catatccacaaaacatgttatggaatcatagccatttatataaaacatggacataaacactattaacttatacacactgtgcctgtgaactgaattattt |
372 |
Q |
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| T |
20131994 |
catatccacaaaacatgttatggcatcatagccatttatataaaacatggacataaacactattaacttatacacactgtgcctgtgaactgaattattt |
20131895 |
T |
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| Q |
373 |
aaaatttcatgattgtgtgacatgatgtcc |
402 |
Q |
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| T |
20131894 |
aaaatttcatgattgtgtgacatgatgtcc |
20131865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 20132266 - 20132122
Alignment:
| Q |
1 |
caaatacttaatagatgatatctatttcaataattatgcattcttatttattttccttatcctgaaattagtaaacaatgacaccggtactagctaagaa |
100 |
Q |
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| T |
20132266 |
caaatacttaatagatgagatctatttcaataattatgcattcttatttattttccttatcctgaaattagtaaacaatgacaccggtactagctaagaa |
20132167 |
T |
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| Q |
101 |
tgcatgactgtagtagaagtacaggtaaccatacacgatacttgt |
145 |
Q |
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| T |
20132166 |
tgcatgactgtagtagaagtacaggtaaccatacacgatacttgt |
20132122 |
T |
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