View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_4 (Length: 412)
Name: NF7725_low_4
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 39369846 - 39369443
Alignment:
| Q |
1 |
aatcattctattttgttctttaatgtttataaaatgcataaaataacatttctaaacttcaggtagtaaattgcacatgagttgaggttccatgtacgaa |
100 |
Q |
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| T |
39369846 |
aatcattctattttgttctgtaatgtttataaaatgcataaaataacatttctaaacttcaggtagtaaattgcacatgagttgaggttccatgtacgaa |
39369747 |
T |
|
| Q |
101 |
tttgcacttttctccatttcagaaaacaagcactaaagtaatctatcacatacnnnnnnn-gacactagcgctagtactagcaagtgtttacctgagaga |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39369746 |
tttgcacttttctccatttcagaaaacaagcactatagtaatctatcacatacaaaaaaaagacactagcgctagtactagcaagtgtttacctgagaga |
39369647 |
T |
|
| Q |
200 |
ggaattcctcaggcgaaccataatcagtgatggctttcttatcagttggagtcacagtaacaacgacattgctggttgtgtcgaagttgtcctcatatct |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39369646 |
ggaattcctcaggtgaaccataatcagtgatggctttcttatcagttggagtcacagtaacaacgacattgctggttgtgtcgaagttgtcctcatatct |
39369547 |
T |
|
| Q |
300 |
aagaacctgacctgtgtattccacctctttgctagggttccactttgagggaactgataatttgaatccatctccatcatatggtaggaagtctgtgttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39369546 |
aagaacctgacctgtgtattccacctctttgctagggttccactttgagggaactgataatttgaatccatctccatcatatggtaggaagtctgtgttt |
39369447 |
T |
|
| Q |
400 |
gtct |
403 |
Q |
| |
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|||| |
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| T |
39369446 |
gtct |
39369443 |
T |
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