View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_5 (Length: 373)
Name: NF7725_low_5
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 32704240 - 32704581
Alignment:
| Q |
15 |
tatgaaaacttttgaattttgatgtaaataaagagaataatcaggaatgtaccttggtatgccccagaaaaccagatttttcttttcccttgaatacggt |
114 |
Q |
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| T |
32704240 |
tatgaaaacttttgaattttgatgtaaataaagagaataatcaggaatgtaccttggtatgccccagaaaaccagatttttcttttcccttgaatacggt |
32704339 |
T |
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| Q |
115 |
ctagctctactgaagctttgtatgcggcaactgatgggaccgggtggccagttgaccacttaagcaatgtattttctggtacatgatctggatttagagt |
214 |
Q |
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| T |
32704340 |
ctagctctactgaagctttgtatgcggcaactgatgggaccgggtggccagttgaccacttaagcaatgtattttctggtacatgatctggatttagagt |
32704439 |
T |
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| Q |
215 |
tacnnnnnnnggtttacccgcttcttcaatattctgcaaatcaaattagaatcaatagtaatcactcacagtcataaatgaatcacgatgaatgtatttt |
314 |
Q |
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| T |
32704440 |
tacaaaaaaaggtttacccgcttcttcaatattctgcaaataaaattagaatcaatagtaatcactcacagtcacaaatgaatcacgatgaatgtatttt |
32704539 |
T |
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| Q |
315 |
tatagcaatgttaccaacctgaagaatgtttagccagtatgt |
356 |
Q |
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| T |
32704540 |
tatagcaatgttaccaacctgaagaatgtttagccagtatgt |
32704581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 16809262 - 16809137
Alignment:
| Q |
64 |
taccttggtatgccccagaaaaccagatttttcttttcccttgaatacggtctagctctactgaagctttgtatgcggcaactgatgggaccgggtggcc |
163 |
Q |
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| T |
16809262 |
taccttggtatacccctgaaaaccatatttttcttttcccttgaatatggtttagttcatgtgatgcttttgatgcagcaactgttgggactagatggcc |
16809163 |
T |
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| Q |
164 |
agttgaccacttaagcaatgtatttt |
189 |
Q |
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| T |
16809162 |
agttgaccacttgaacaatgtatttt |
16809137 |
T |
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