View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_6 (Length: 340)
Name: NF7725_low_6
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1228965 - 1228652
Alignment:
| Q |
1 |
ttttagaggacacaaaaacataaagatcaaaatgaaaaacatcaaaatttgattaattaattaaccttgtgacacccctataaactgagcttctttgtgg |
100 |
Q |
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| T |
1228965 |
ttttagaggacacaaaaacataaagatcaaaatgaaaaacatcaaaatttgattaattaattaaccttgtgacacccctataaactgagcttctttgtgg |
1228866 |
T |
|
| Q |
101 |
aggtgagtttcttggaatgcttttacgtttacgtttggtggtggaagaggtagaagaagtagaagtgtttttgagatttttctgagatttcttagccatg |
200 |
Q |
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| T |
1228865 |
aggtgagtttcttggaatgcttttacgtttacgtttggtggtggaagaggaagaagaagtagaagtgtttttgagatttttctgagatttcttagccatg |
1228766 |
T |
|
| Q |
201 |
aatggaagcttttactcacaagaagatcagagatgacaacacaacactacactatactacatacgtatacagttgggaagagtgaaggaagggagatagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228765 |
aatggaagcttttactcacaagaagatcagagatgaca-----acactacactatactacatacgtatacagttgggaagagtgaaggaagggagatagt |
1228671 |
T |
|
| Q |
301 |
tatataaatatatgactaa |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
1228670 |
tatataaatatatgactaa |
1228652 |
T |
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