View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7725_low_7 (Length: 329)

Name: NF7725_low_7
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7725_low_7
NF7725_low_7
[»] chr3 (17 HSPs)
chr3 (1-287)||(24688480-24688766)
chr3 (281-321)||(24688419-24688459)
chr3 (281-321)||(42394436-42394476)
chr3 (281-321)||(54237139-54237179)
chr3 (281-321)||(27748606-27748646)
chr3 (281-321)||(36150173-36150213)
chr3 (285-321)||(40480796-40480832)
chr3 (281-321)||(40808908-40808948)
chr3 (281-321)||(42100731-42100771)
chr3 (281-321)||(45126945-45126985)
chr3 (281-321)||(46941096-46941136)
chr3 (288-321)||(53273701-53273734)
chr3 (281-321)||(25413724-25413764)
chr3 (281-321)||(52629871-52629911)
chr3 (285-321)||(53581875-53581911)
chr3 (281-321)||(54246165-54246205)
chr3 (281-321)||(4190282-4190322)
[»] scaffold0038 (1 HSPs)
scaffold0038 (281-321)||(112698-112738)
[»] chr8 (17 HSPs)
chr8 (281-321)||(11582809-11582849)
chr8 (281-321)||(26125678-26125718)
chr8 (281-321)||(36743500-36743540)
chr8 (281-318)||(30660762-30660799)
chr8 (281-321)||(29800967-29801007)
chr8 (281-321)||(42197452-42197492)
chr8 (281-321)||(45397359-45397399)
chr8 (288-321)||(42295245-42295278)
chr8 (281-321)||(9241595-9241635)
chr8 (281-321)||(29705405-29705445)
chr8 (281-321)||(31384707-31384747)
chr8 (291-321)||(5754956-5754986)
chr8 (291-321)||(20148813-20148843)
chr8 (283-320)||(2165981-2166018)
chr8 (288-321)||(2547046-2547079)
chr8 (288-321)||(30912579-30912612)
chr8 (281-321)||(42699300-42699340)
[»] chr7 (16 HSPs)
chr7 (281-321)||(24001029-24001069)
chr7 (281-321)||(42538448-42538488)
chr7 (288-321)||(5015445-5015478)
chr7 (288-321)||(35069771-35069804)
chr7 (288-321)||(42972902-42972935)
chr7 (281-321)||(5810941-5810981)
chr7 (281-321)||(27393277-27393317)
chr7 (281-321)||(43343641-43343681)
chr7 (281-321)||(44416951-44416991)
chr7 (281-321)||(45326063-45326103)
chr7 (288-318)||(26898422-26898452)
chr7 (291-321)||(44326231-44326261)
chr7 (281-318)||(32029837-32029874)
chr7 (281-321)||(4638216-4638256)
chr7 (281-321)||(10573792-10573832)
chr7 (281-321)||(38160596-38160636)
[»] chr6 (13 HSPs)
chr6 (281-321)||(7292790-7292830)
chr6 (281-321)||(9698350-9698390)
chr6 (281-321)||(13743238-13743278)
chr6 (281-321)||(13748738-13748778)
chr6 (288-321)||(7367599-7367632)
chr6 (288-321)||(24204004-24204037)
chr6 (288-321)||(26670026-26670059)
chr6 (281-321)||(7273352-7273392)
chr6 (288-321)||(21279979-21280012)
chr6 (288-321)||(26466849-26466882)
chr6 (288-321)||(30014393-30014426)
chr6 (288-321)||(30736032-30736065)
chr6 (285-321)||(27441589-27441625)
[»] chr5 (7 HSPs)
chr5 (281-321)||(2614666-2614706)
chr5 (281-321)||(41334680-41334720)
chr5 (281-321)||(7617176-7617216)
chr5 (281-321)||(18034025-18034065)
chr5 (288-321)||(22512355-22512388)
chr5 (281-321)||(5257038-5257078)
chr5 (288-321)||(33801519-33801552)
[»] chr4 (20 HSPs)
chr4 (281-321)||(25051736-25051776)
chr4 (281-321)||(27864607-27864647)
chr4 (281-321)||(33703184-33703224)
chr4 (281-321)||(43949818-43949858)
chr4 (288-321)||(39631151-39631184)
chr4 (288-321)||(48463467-48463500)
chr4 (288-321)||(55966363-55966396)
chr4 (281-321)||(23036023-23036063)
chr4 (281-321)||(27893859-27893899)
chr4 (281-320)||(27316731-27316770)
chr4 (288-318)||(27550359-27550389)
chr4 (291-321)||(28982839-28982869)
chr4 (291-321)||(31680955-31680985)
chr4 (288-321)||(43514703-43514736)
chr4 (281-318)||(51512285-51512322)
chr4 (281-321)||(712003-712043)
chr4 (281-321)||(1771283-1771323)
chr4 (285-321)||(23204795-23204831)
chr4 (281-321)||(35017776-35017815)
chr4 (281-321)||(41878449-41878489)
[»] chr2 (11 HSPs)
chr2 (281-321)||(19047200-19047240)
chr2 (281-321)||(1750457-1750497)
chr2 (281-321)||(12302270-12302310)
chr2 (281-321)||(30838675-30838715)
chr2 (281-320)||(43490419-43490458)
chr2 (288-321)||(43335780-43335813)
chr2 (281-317)||(33229345-33229381)
chr2 (281-321)||(42849875-42849915)
chr2 (281-321)||(4451967-4452007)
chr2 (281-321)||(16096790-16096830)
chr2 (285-317)||(39149313-39149345)
[»] chr1 (9 HSPs)
chr1 (281-321)||(5489819-5489859)
chr1 (281-321)||(43571103-43571143)
chr1 (288-321)||(48498979-48499012)
chr1 (281-321)||(4401371-4401411)
chr1 (283-321)||(23989540-23989578)
chr1 (288-321)||(4888093-4888126)
chr1 (281-314)||(24769523-24769556)
chr1 (281-318)||(50448280-50448317)
chr1 (281-321)||(2497579-2497619)
[»] scaffold0119 (1 HSPs)
scaffold0119 (288-321)||(735-768)
[»] scaffold0385 (1 HSPs)
scaffold0385 (281-321)||(11294-11334)
[»] scaffold0187 (2 HSPs)
scaffold0187 (285-321)||(14205-14241)
scaffold0187 (285-321)||(24533-24569)
[»] scaffold0003 (1 HSPs)
scaffold0003 (285-321)||(45736-45772)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 24688766 - 24688480
Alignment:
Q  1 ctcaagaaattaatccgcgggtattgttctaaaaacaattttacatattttaatttcacaaagtagggtgtacaaaggaactcagtgcactgacgatata 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24688766 ctcaagaaattaatccacgggtattgttctaaaaacaattttacatattttaatttcacaaagtagggtgtacaaaggaactcagtgcactgacgatata 24688667  T
Q  101 gttttgctttgaagttgtcacatgaattccggtaagttagcatttttattttgtcggctatattcttcagttcatactccaaaatatcattggatttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24688666 gttttgctttgaagttgtcacatgaattccggtaagttagcatttttattttgtctgctatattcttcagttcatactccaaaatatcattggatttggt 24688567  T
Q  201 ataccatacttgcttattcatcctttccttacccaatgttattaagttctaatggatatctaaaggaaaatgttacatgaacaccct 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24688566 ataccatacttgcttattcatcctttccttacccaatgttattaagttgtaatggatatctaaaggaaaatgttacatgaacaccct 24688480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 24688459 - 24688419
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24688459 acaccctatgtattagggatattttggtaagttcatctcac 24688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 42394476 - 42394436
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42394476 acaccctatgtattagggatattttggtaagttcatctcac 42394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 54237139 - 54237179
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  54237139 acaccctatgtattagggatattttggtaagttcatctcac 54237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 27748606 - 27748646
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  27748606 acaccttatgtattagggatattttggtaagttcatctcac 27748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 36150173 - 36150213
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  36150173 acaccctatgtatcagggatattttggtaagttcatctcac 36150213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 40480796 - 40480832
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||    
T  40480796 cctatgtattagggatattttggtaagttcatctcac 40480832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 40808908 - 40808948
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  40808908 acaccccatgtattagggatattttggtaagttcatctcac 40808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 42100731 - 42100771
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  42100731 acaccccatgtattagggatattttggtaagttcatctcac 42100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 45126985 - 45126945
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  45126985 acaccccatgtattagggatattttggtaagttcatctcac 45126945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 46941096 - 46941136
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  46941096 acaccccatgtattagggatattttggtaagttcatctcac 46941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 53273734 - 53273701
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  53273734 atgtattagggatattttggtaagttcatctcac 53273701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 25413724 - 25413764
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  25413724 acaccttatgtattagggatatttttgtaagttcatctcac 25413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 52629871 - 52629911
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  52629871 acaccctatgtattaaggatatttttgtaagttcatctcac 52629911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 53581911 - 53581875
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||| ||||||||||||||    
T  53581911 cctatgtattagggatattttgataagttcatctcac 53581875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 54246205 - 54246165
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  54246205 acaccctatgtattagagatatttttgtaagttcatctcac 54246165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 4190322 - 4190282
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  4190322 acaccttatgtattagagatattttggtaaattcatctcac 4190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 112698 - 112738
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  112698 acaccctatgtattagggatattttggtaagttcatctcac 112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 11582809 - 11582849
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11582809 acaccctatgtattagggatattttggtaagttcatctcac 11582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 26125678 - 26125718
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26125678 acaccctatgtattagggatattttggtaagttcatctcac 26125718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 36743540 - 36743500
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36743540 acaccctatgtattagggatattttggtaagttcatctcac 36743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 30660799 - 30660762
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatct 318  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30660799 acaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 29801007 - 29800967
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  29801007 acaccccatgtattagggatattttggtaagttcatctcac 29800967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 42197492 - 42197452
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  42197492 acacactatgtattagggatattttggtaagttcatctcac 42197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 45397359 - 45397399
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  45397359 acaccctatgtattagggatatttttgtaagttcatctcac 45397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 42295245 - 42295278
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  42295245 atgtattagggatattttggtaagttcatctcac 42295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 9241595 - 9241635
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  9241595 acaccctatatattagggatatttttgtaagttcatctcac 9241635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 29705405 - 29705445
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  29705405 acaccccatgtattagggatattttgataagttcatctcac 29705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 31384707 - 31384747
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  31384707 acaccccatgtattaggaatattttggtaagttcatctcac 31384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 5754956 - 5754986
Alignment:
Q  291 tattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||    
T  5754956 tattagggatattttggtaagttcatctcac 5754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 20148813 - 20148843
Alignment:
Q  291 tattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||    
T  20148813 tattagggatattttggtaagttcatctcac 20148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 2166018 - 2165981
Alignment:
Q  283 accctatgtattagggatattttggtaagttcatctca 320  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  2166018 accccatgtattagagatattttggtaagttcatctca 2165981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 2547046 - 2547079
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||| |||||||||||||||    
T  2547046 atgtattagggatattttagtaagttcatctcac 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 30912612 - 30912579
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||| ||||||||||||||||||||||    
T  30912612 atgtattaggggtattttggtaagttcatctcac 30912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 42699300 - 42699340
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||| ||||||||| ||||||||| |||||||||||||||    
T  42699300 acaccttatgtattatggatatttttgtaagttcatctcac 42699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 24001069 - 24001029
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24001069 acaccctatgtattagggatattttggtaagttcatctcac 24001029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 42538488 - 42538448
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42538488 acaccctatgtattagggatattttggtaagttcatctcac 42538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 5015445 - 5015478
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  5015445 atgtattagggatattttggtaagttcatctcac 5015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 35069771 - 35069804
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  35069771 atgtattagggatattttggtaagttcatctcac 35069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 42972902 - 42972935
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  42972902 atgtattagggatattttggtaagttcatctcac 42972935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 5810981 - 5810941
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  5810981 acaccctatatattagggatattttgataagttcatctcac 5810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 27393317 - 27393277
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  27393317 acactctatgtattagggatatttttgtaagttcatctcac 27393277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 43343681 - 43343641
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  43343681 acaccccatgtattagggatattttgataagttcatctcac 43343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 44416991 - 44416951
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  44416991 acaccccatgtattagggatattttgataagttcatctcac 44416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 45326063 - 45326103
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  45326063 acaccccatatattagggatattttggtaagttcatctcac 45326103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Complemental strand, 26898452 - 26898422
Alignment:
Q  288 atgtattagggatattttggtaagttcatct 318  Q
    |||||||||||||||||||||||||||||||    
T  26898452 atgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 44326231 - 44326261
Alignment:
Q  291 tattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||    
T  44326231 tattagggatattttggtaagttcatctcac 44326261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 32029874 - 32029837
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatct 318  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  32029874 acaccccatgtattagggatattttggtaaattcatct 32029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 4638256 - 4638216
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  4638256 acaccccatatattatggatattttggtaagttcatctcac 4638216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 10573792 - 10573832
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| |||||||||| |||||||||||| ||||||||||    
T  10573792 acaccccatgtattaggaatattttggtaaattcatctcac 10573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 38160636 - 38160596
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| |||||||||||||||||| |||| ||||||||||    
T  38160636 acaccccatgtattagggatattttagtaacttcatctcac 38160596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 7292790 - 7292830
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7292790 acaccctatgtattagggatattttggtaagttcatctcac 7292830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 9698390 - 9698350
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9698390 acaccctatgtattagggatattttggtaagttcatctcac 9698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 13743278 - 13743238
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  13743278 acaccccatgtattagggatattttggtaagttcatctcac 13743238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 13748778 - 13748738
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  13748778 acaccccatgtattagggatattttggtaagttcatctcac 13748738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 7367599 - 7367632
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  7367599 atgtattagggatattttggtaagttcatctcac 7367632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 24204037 - 24204004
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  24204037 atgtattagggatattttggtaagttcatctcac 24204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 26670059 - 26670026
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  26670059 atgtattagggatattttggtaagttcatctcac 26670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 7273392 - 7273352
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  7273392 acaccccatgtattagagatattttggtaagttcatctcac 7273352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 21279979 - 21280012
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||| ||||||||||    
T  21279979 atgtattagggatattttggtaaattcatctcac 21280012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 26466849 - 26466882
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||| ||||||||||||||||||||||    
T  26466849 atgtattagggttattttggtaagttcatctcac 26466882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 30014393 - 30014426
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||| |||||||||||||||||||||||    
T  30014393 atgtattaggcatattttggtaagttcatctcac 30014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 30736032 - 30736065
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||| ||||||||||||||||||||||||    
T  30736032 atgtattagtgatattttggtaagttcatctcac 30736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 27441589 - 27441625
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  27441589 cctatgtattaaggatattttggtaaattcatctcac 27441625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 2614706 - 2614666
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2614706 acaccctatgtattagggatattttggtaagttcatctcac 2614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 41334720 - 41334680
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41334720 acaccctatgtattagggatattttggtaagttcatctcac 41334680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 7617176 - 7617216
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  7617176 acaccccatgtattagggatattttggtaagttcatctcac 7617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 18034025 - 18034065
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  18034025 acaccctatgtattagggatatttttgtaagttcatctcac 18034065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 22512355 - 22512388
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  22512355 atgtattagggatattttggtaagttcatctcac 22512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 5257038 - 5257078
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  5257038 acaccccatgtattagggatattttggtaatttcatctcac 5257078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 33801519 - 33801552
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||| |||||||||||||||    
T  33801519 atgtattagggatattttagtaagttcatctcac 33801552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 25051736 - 25051776
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25051736 acaccctatgtattagggatattttggtaagttcatctcac 25051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 27864607 - 27864647
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27864607 acaccccatgtattagggatattttggtaagttcatctcac 27864647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 33703184 - 33703224
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  33703184 acaccccatgtattagggatattttggtaagttcatctcac 33703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 43949858 - 43949818
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  43949858 acaccccatgtattagggatattttggtaagttcatctcac 43949818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 39631151 - 39631184
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  39631151 atgtattagggatattttggtaagttcatctcac 39631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 48463500 - 48463467
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  48463500 atgtattagggatattttggtaagttcatctcac 48463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 55966396 - 55966363
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  55966396 atgtattagggatattttggtaagttcatctcac 55966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 23036023 - 23036063
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  23036023 acaccctatatattagggatatttttgtaagttcatctcac 23036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 27893899 - 27893859
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  27893899 acaccccatgtattagggatattttggtaatttcatctcac 27893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 27316770 - 27316731
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctca 320  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  27316770 acaccccatgtattaaggatattttggtaagttcatctca 27316731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 27550359 - 27550389
Alignment:
Q  288 atgtattagggatattttggtaagttcatct 318  Q
    |||||||||||||||||||||||||||||||    
T  27550359 atgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 28982869 - 28982839
Alignment:
Q  291 tattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||    
T  28982869 tattagggatattttggtaagttcatctcac 28982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 31680955 - 31680985
Alignment:
Q  291 tattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||    
T  31680955 tattagggatattttggtaagttcatctcac 31680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 43514736 - 43514703
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||| ||||||||||||||||||||||    
T  43514736 atgtattagggttattttggtaagttcatctcac 43514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 51512322 - 51512285
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatct 318  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  51512322 acaccccatgtattagagatattttggtaagttcatct 51512285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 712003 - 712043
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||| |||| |||||||||||||| ||||||||||    
T  712003 acaccctatgcattaaggatattttggtaaattcatctcac 712043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 1771323 - 1771283
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||| ||||||||| ||||||||||||||    
T  1771323 acaccccatgtattagagatattttgataagttcatctcac 1771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 23204831 - 23204795
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  23204831 cctatgtattagggatatttttgtaagttcatgtcac 23204795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 35017776 - 35017815
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  35017776 acaccccatgtat-agggatattttggtaagttcatctcac 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 41878449 - 41878489
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  41878449 acaccctatccattagggatattttgataagttcatctcac 41878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 19047200 - 19047240
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19047200 acaccctatgtattagggatattttggtaagttcatctcac 19047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 1750457 - 1750497
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  1750457 acaccctatgtattagggatatttttgtaagttcatctcac 1750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 12302310 - 12302270
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  12302310 acaccctatgtattagggatatttttgtaagttcatctcac 12302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 30838675 - 30838715
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  30838675 acaccccatgtattagggatattttggtaagttcatctcac 30838715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 43490458 - 43490419
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctca 320  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  43490458 acactctatgtattagggatattttggtaagttcatctca 43490419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 43335813 - 43335780
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  43335813 atgtattagggatattttggtaagttcatctcac 43335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 33229345 - 33229381
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatc 317  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33229345 acaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 42849915 - 42849875
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  42849915 acaccccatgtattagggatattttgataagttcatctcac 42849875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 4452007 - 4451967
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||| |||| ||||||||||||||||||| ||||||||||    
T  4452007 acaccatatgcattagggatattttggtaaattcatctcac 4451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 16096790 - 16096830
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  16096790 acaccccatgtattagggatattttggtgagttaatctcac 16096830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 39149345 - 39149313
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatc 317  Q
    |||||||||||| ||||||||||||||||||||    
T  39149345 cctatgtattagagatattttggtaagttcatc 39149313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 5489819 - 5489859
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5489819 acaccctatgtattagggatattttggtaagttcatctcac 5489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 43571143 - 43571103
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  43571143 acaccccatgtattagggatattttggtaagttcatctcac 43571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 48499012 - 48498979
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  48499012 atgtattagggatattttggtaagttcatctcac 48498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 4401371 - 4401411
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  4401371 acaccccatgtattagagatattttggtaagttcatctcac 4401411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 23989578 - 23989540
Alignment:
Q  283 accctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||||| || |||||||    
T  23989578 accctatgtattagggatattttggtaaatttatctcac 23989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 4888093 - 4888126
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    |||||||||||||||||||||||||| |||||||    
T  4888093 atgtattagggatattttggtaagtttatctcac 4888126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 24769556 - 24769523
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttc 314  Q
    |||||| |||||||||||||||||||||||||||    
T  24769556 acaccccatgtattagggatattttggtaagttc 24769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 50448317 - 50448280
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatct 318  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  50448317 acaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 2497619 - 2497579
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  2497619 acaccccatatattaaggatattttggtaagttcatctcac 2497579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 735 - 768
Alignment:
Q  288 atgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||||||||||||||||    
T  735 atgtattagggatattttggtaagttcatctcac 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 11294 - 11334
Alignment:
Q  281 acaccctatgtattagggatattttggtaagttcatctcac 321  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  11294 acaccccatatattagggatattttggtaagttcatctcac 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 14241 - 14205
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14241 cctatgtattagggatatttttgtaagttcatctcac 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 24569 - 24533
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24569 cctatgtattagggatatttttgtaagttcatctcac 24533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 45772 - 45736
Alignment:
Q  285 cctatgtattagggatattttggtaagttcatctcac 321  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  45772 cctatgtattaaggatattttggtaaattcatctcac 45736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University