View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7725_low_8 (Length: 317)
Name: NF7725_low_8
Description: NF7725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7725_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 37884998 - 37885244
Alignment:
| Q |
9 |
aatgaaatatttataatttaataatttaaatgaaacatgcggtaaattgagcatacatgaactccttataacactttatgatcggagattagtttttatt |
108 |
Q |
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| T |
37884998 |
aatgaaatatttgtaacttaataatttaaatgaaacatgttgtaaatagagcattaatgaactccttttaacattctatgatcggagattagtttttatt |
37885097 |
T |
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| Q |
109 |
tgtaatttaataaaatatatatgatgaatat--accttcaccacaatttaacactcttgaattgagtttgagtgtgcaagaactcaagcaaagggagtga |
206 |
Q |
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| T |
37885098 |
tgtaatttaataaaatatatatgatgaatatataccttcaccacaatttaacacccttgaactgagtttgagtgtgcaagaactcaagcaaagggagtga |
37885197 |
T |
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| Q |
207 |
tgggtcaacattggataactcaaacttgtcaccattgacaaagaaaa |
253 |
Q |
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| T |
37885198 |
tgggtcaacattggataactcaaacttgtcaccattgacacagaaaa |
37885244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 37880661 - 37880801
Alignment:
| Q |
136 |
atataccttcaccacaa-----tttaacactcttgaattgagtttgagtgtgcaagaactcaagcaaagggagtgatgggtcaacattggataactcaaa |
230 |
Q |
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| T |
37880661 |
atataccttcaccacaaccgagtttaacactcttgaattgagtttgagtacgcaaaaactcaagcaaagtggttgaaggatcaactttggataactcaaa |
37880760 |
T |
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| Q |
231 |
cttgtcaccattgacaaagaaaaccaaatttgtttgattct |
271 |
Q |
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| T |
37880761 |
cttttcaccattgacacagaaaatcaaacttgtttgattct |
37880801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 37885244 - 37885326
Alignment:
| Q |
221 |
ataactcaaacttgtcaccattga----caaagaaaaccaaatttgtttgattcttcttactcttcttcacttccgtacttca |
299 |
Q |
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| T |
37885244 |
ataactcaaacttgtcaccattgattgacacagaaaaccaaatttgtttgattcttcttactcttcttcacttccgtacttca |
37885326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 299
Target Start/End: Original strand, 37865111 - 37865286
Alignment:
| Q |
132 |
atgaatataccttcaccacaa-----tttaacactcttgaattgagtttgagtgtgcaagaactcaagcaaagggagtgatgggtcaacattggataact |
226 |
Q |
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| T |
37865111 |
atgattataccttcaccacaaccgagtttaacactcttgaagcgagtttgagtacgcaagaattcaatcaaagtggttgatgggtcaactttggatagct |
37865210 |
T |
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| Q |
227 |
caaacttgtcaccattgacaaagaaaaccaaa---tttgtttgattcttcttactcttcttcacttccgtacttca |
299 |
Q |
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| T |
37865211 |
caaatttttcaccattaacacaaaaaatcaaacttgttgtttgatttttctcactcttattcacttccatacttca |
37865286 |
T |
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