View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_high_23 (Length: 206)
Name: NF7726_high_23
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_high_23 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 34611664 - 34611859
Alignment:
| Q |
11 |
gtgttgatgaagaataaacaggggggatatttggattcnnnnnnncgtaatcatgtgcttatggtataaacatatgtgtaagtgtattgagtgtttgtgt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34611664 |
gtgttaatgaagaataaacaggggggatatttggattcaaaaaaacgtaatcatgtgcttatggtataaacatatgtgtaagtgtattgagtgtttgtgt |
34611763 |
T |
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| Q |
111 |
ataacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34611764 |
ataacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt |
34611859 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 5963459 - 5963365
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttat-attttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt |
206 |
Q |
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|||||||||| || ||||||||||||| |||| || ||||| ||||| | ||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
5963459 |
aacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaaattgt |
5963365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 426000 - 425913
Alignment:
| Q |
111 |
ataacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagt |
198 |
Q |
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|||||||| ||| ||||||||||||||||||||||| | ||| |||||| || || || |||||| || |||||||||||||||| |
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| T |
426000 |
ataacttattttgcagcttatagcataagcgcttattgtataatttcttatgaacaagttaattctataatacaagataaaataaagt |
425913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 12110292 - 12110347
Alignment:
| Q |
151 |
taagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt |
206 |
Q |
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||||| ||||| ||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
12110292 |
taagcacttatgaataacctatttctattacacaagataaaataaagtcaaattgt |
12110347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 32791927 - 32791836
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaatt |
204 |
Q |
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|
|||||||||| |||||| |||||| ||| |||| | ||| ||||||| ||||| ||| |||||||| |||||||||||||||| ||||| |
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| T |
32791927 |
aacttaatttgcagcttgtagcattagcatttatcatataacctcttataaataagctacttctattacacaagataaaataaagtgaaatt |
32791836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 38600456 - 38600423
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttat |
146 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
38600456 |
aacttaatttgcagcttatagcataagcgcttat |
38600423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 35331037 - 35331069
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgctta |
145 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
35331037 |
aacttaatttacagcttatagcataagcactta |
35331069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 139917 - 139972
Alignment:
| Q |
151 |
taagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt |
206 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
139917 |
taagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt |
139972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 34958233 - 34958307
Alignment:
| Q |
124 |
cagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagt |
198 |
Q |
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|
|||||||||||||||||| || | ||||| ||||| |||||||||||||||| | |||||||||||||||| |
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| T |
34958233 |
cagcttatagcataagcgtgcatcatataagcacttatgaataaactatttctataacacaagataaaataaagt |
34958307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 36587888 - 36587918
Alignment:
| Q |
116 |
ttaatttacagcttatagcataagcgcttat |
146 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
36587888 |
ttaatttacagcttatagcataagcgcttat |
36587918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 5435725 - 5435758
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttat |
146 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
5435725 |
aacttaatttacagcttatagcataagtgcttat |
5435758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 38578423 - 38578454
Alignment:
| Q |
115 |
cttaatttacagcttatagcataagcgcttat |
146 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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| T |
38578423 |
cttaatttacagcttatagcataagcgcttat |
38578454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 10280535 - 10280568
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttat |
146 |
Q |
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|
|||||| ||||||||||||||||||||||||||| |
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| T |
10280535 |
aacttagtttacagcttatagcataagcgcttat |
10280568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 15942879 - 15942838
Alignment:
| Q |
157 |
cttattaataaactatttctattatgcaagataaaataaagt |
198 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
15942879 |
cttatcaataagctatttctattatacaagataaaataaagt |
15942838 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 45099129 - 45099100
Alignment:
| Q |
117 |
taatttacagcttatagcataagcgcttat |
146 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
45099129 |
taatttacagcttatagcataagcgcttat |
45099100 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 51560448 - 51560415
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttat |
146 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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| T |
51560448 |
aacttaatttacagcttattgcataagcgcttat |
51560415 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 41880679 - 41880586
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt |
206 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||| | ||| ||||| |||| ||||||||||||| || |||||||||||| ||||||| |
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|
| T |
41880679 |
aacttactttgcagcttatagcacaagcgcttatcatgtaattgcttataaatatactatttctattacacacgataaaataaagcaaaattgt |
41880586 |
T |
|
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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 178703 - 178623
Alignment:
| Q |
113 |
aacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaat |
193 |
Q |
| |
|
|||||||| ||| ||||||||| |||| |||||| | |||||| ||| ||| |||||||||||||| ||||||||||| |
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|
| T |
178703 |
aacttaatatactgcttatagcgtaagtgcttattatataagctgttaggaattaactatttctattacacaagataaaat |
178623 |
T |
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