View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_high_4 (Length: 496)
Name: NF7726_high_4
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_high_4 |
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| [»] scaffold0700 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 46201521 - 46201055
Alignment:
| Q |
18 |
caaatcacatccgacgacggcaaatgacagttgtacatcgacatcccacacgactcaccaccaccaccctgaacttgtccactgtccaccgcaccggaaa |
117 |
Q |
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| T |
46201521 |
caaatcacatccgacgacggcaaatgacagttgtacatcgacatcccacacgactcaccaccaccaccctgaccttgtccactgtccaccgcaccggaaa |
46201422 |
T |
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| Q |
118 |
cattctgcgagtttccttcaccaccaccaccagacaccgagtttccaccttcatcttcttccaacggcaacctatgatacgacggattattaaacgaaga |
217 |
Q |
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| T |
46201421 |
cattctgcgagtttccttcaccaccacca---gacaccgagtttccaccttcatcttcttccaacggcaacctatgatacgacggattattaaacgaaga |
46201325 |
T |
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| Q |
218 |
agctatcacaaacaccgtccctgcagctatcaaatttccagcaacaattcctccaacaatctgtccttgaggtccagcaagagagatcgagaagttactc |
317 |
Q |
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| T |
46201324 |
agcaatcacaaacaccgtccctgcagctatcaaatttccagcaacaattcctccaacaatctgtccttgaggtccagcaagagagatcgagaagttactc |
46201225 |
T |
|
| Q |
318 |
ggaatcgccggagaaacaccgtgttgttgaggaacaaaagtggcagttatagaaagaatatcaaaacggccgtgaaaagtaacggtggttcctggtgtag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46201224 |
ggaatcgccggagaaacaccgtgttgttgaggaacaaaagtggcagttatagaaagaatatcaaaacggccgtgaaaagtaacggtggttcctggtgtag |
46201125 |
T |
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| Q |
418 |
ttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaaccaatattctt |
487 |
Q |
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| T |
46201124 |
ttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaaccaatattctt |
46201055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0700 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0700
Description:
Target: scaffold0700; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 213 - 488
Target Start/End: Complemental strand, 5854 - 5579
Alignment:
| Q |
213 |
gaagaagctatcacaaacaccgtccctgcagctatcaaatttccagcaacaattcctccaacaatctgtccttgaggtccagcaagagagatcgagaagt |
312 |
Q |
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| T |
5854 |
gaagaagctataacaaacattgtcaccgcatctatccaatttccagcaacaattcctccaacaatctgtccttgaggtccagcaagcaagatctagaagt |
5755 |
T |
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| Q |
313 |
tactcggaatcgccggagaaacaccgtgttgttgaggaacaaaagtggcagttatagaaagaatatcaaaacggccgtgaaaagtaacggtggttcctgg |
412 |
Q |
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| T |
5754 |
ttctcggaatcacgggagaaacaccgggttgttgaggaataaaagtagcagttatagaaagaatatcaaaacggctgtgaaaagtaattgtggttccggg |
5655 |
T |
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| Q |
413 |
tgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaaccaatattcttc |
488 |
Q |
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| T |
5654 |
tgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaaccaatattcttc |
5579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 27816164 - 27816261
Alignment:
| Q |
381 |
aaacggccgtgaaaagtaacggtggttcctggtgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaacc |
478 |
Q |
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| T |
27816164 |
aaacgaccgtgaaaagtaacggtggtgccaggaggaccagaaggttgacggagtgtaacgttagctacagtgcctgaaccggttaatacacataaacc |
27816261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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