View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_high_8 (Length: 468)
Name: NF7726_high_8
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_high_8 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 1033919 - 1034373
Alignment:
| Q |
1 |
atgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033919 |
atgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaa |
1034018 |
T |
|
| Q |
101 |
tgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034019 |
tgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaat |
1034118 |
T |
|
| Q |
201 |
aaatataacagggagacattctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgtattgtagcatcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034119 |
aaatataacagggagacattctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgtattgtagcatcca |
1034218 |
T |
|
| Q |
301 |
aggttggaagtggaacctccatatttaataagttttttctccttgcaaatttgttcacttaattaagaattttgttgcttatagtagcattttttatcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034219 |
aggttggaagtggaacctccatatttaataagttttttctccttgcaaatttgttcacttaattaagaattttgttgcttatagtagcattttttatcca |
1034318 |
T |
|
| Q |
401 |
tactagcttcactgctacgacacac--tgtgtaaactattatgtacctgatattt |
453 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1034319 |
tactagcttcactgctacgacacacagtgtgtaaactattatgtacctgatattt |
1034373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 1044307 - 1044613
Alignment:
| Q |
2 |
tgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| |||||| || |
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|
| T |
1044307 |
tgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgat |
1044406 |
T |
|
| Q |
102 |
gctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaata |
201 |
Q |
| |
|
|||||||| || || | |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| | |
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| T |
1044407 |
gctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaaca |
1044506 |
T |
|
| Q |
202 |
aatataacagggagacattctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaa |
301 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1044507 |
agtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgtattgcagcatccaa |
1044606 |
T |
|
| Q |
302 |
ggttgga |
308 |
Q |
| |
|
|| |||| |
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|
| T |
1044607 |
gggtgga |
1044613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 1065950 - 1066197
Alignment:
| Q |
30 |
gtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttg |
129 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||| |||||||| ||| |||| |||||||||||||| ||||| || || |||||||| |||| |
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| T |
1065950 |
gtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagaccttg |
1066049 |
T |
|
| Q |
130 |
ttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacacttc |
229 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| || |||||||||||||| | |||||||| || ||||||||||||||||| ||||||| ||| |
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| T |
1066050 |
ttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataacagggagacgttctacatttc |
1066149 |
T |
|
| Q |
230 |
tgatccggttgtaggttatacagactatccctttcttgaatgaagaaa |
277 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
1066150 |
tgatccagttctaggttatactgactacccctttcttgaatgaagaaa |
1066197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 1058837 - 1059116
Alignment:
| Q |
9 |
attgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatag |
108 |
Q |
| |
|
|||||| || || |||| || ||||| ||||||||||| ||||| || |||||| ||| ||| |||||||| ||| || | |||||||||||||| |||| |
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|
| T |
1058837 |
attgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatcaatgccatag |
1058936 |
T |
|
| Q |
109 |
cagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataa |
208 |
Q |
| |
|
| || |||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || || ||||| |
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| T |
1058937 |
ctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctcctctaaacaagtataa |
1059036 |
T |
|
| Q |
209 |
cagggagacattctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgta |
288 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| |||||||||| ||||| || ||||||||||||||||| || ||||||| |
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|
| T |
1059037 |
cagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
1059116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 1071677 - 1071921
Alignment:
| Q |
30 |
gtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttg |
129 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||| |||||||| ||| |||| |||||||||||||| ||||| || || |||||||| || | |
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| T |
1071677 |
gtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagacctag |
1071776 |
T |
|
| Q |
130 |
ttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacacttc |
229 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||| || || ||||||||||||||||| ||| ||| |
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|
| T |
1071777 |
ttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataacagggagacattttacgtttc |
1071876 |
T |
|
| Q |
230 |
tgatccggttgtaggttatacagactatccctttcttgaatgaag |
274 |
Q |
| |
|
|||||| ||| |||||||||| ||||| || |||||||||||||| |
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|
| T |
1071877 |
tgatccagttctaggttatactgactacccttttcttgaatgaag |
1071921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 39 - 270
Target Start/End: Original strand, 1053602 - 1053833
Alignment:
| Q |
39 |
agaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttatg |
138 |
Q |
| |
|
||||||| ||||||||| ||||| |||||| | ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||| ||||| |
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|
| T |
1053602 |
agaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgcttatg |
1053701 |
T |
|
| Q |
139 |
gtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacacttctgatccggt |
238 |
Q |
| |
|
||||||||||| || | ||||||||||| || |||||||||||||| || |||||||| || || ||||| |||||||||||||||||||||||||| || |
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|
| T |
1053702 |
gtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataatagggagacattctacacttctgatccagt |
1053801 |
T |
|
| Q |
239 |
tgtaggttatacagactatccctttcttgaat |
270 |
Q |
| |
|
| |||||||||| ||||| || | |||||||| |
|
|
| T |
1053802 |
tataggttatactgactacccttctcttgaat |
1053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 1046919 - 1047189
Alignment:
| Q |
28 |
tggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatct |
127 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| | ||| | ||||| |||| ||| ||||||||||||||||| || ||||||| |||||| |
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|
| T |
1046919 |
tggtgccagtgagaaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaatagggtagatct |
1047018 |
T |
|
| Q |
128 |
tgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacact |
227 |
Q |
| |
|
||||| ||| | ||||| ||| |||| |||||||||||||| |||||||||||||| || ||||| || || || ||||| | ||||||||||| |||| |
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|
| T |
1047019 |
tgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctcccctaaacaagtataatatggagacattctgcact |
1047118 |
T |
|
| Q |
228 |
tctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgta-ttgtagcat |
297 |
Q |
| |
|
|||||||| ||| | |||||||| ||||| || ||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
1047119 |
tctgatccagttcttggttataccgactacccttttcttgaatgaataaacatatgttgtacttgtagcat |
1047189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 1640610 - 1640371
Alignment:
| Q |
28 |
tggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatct |
127 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||| || ||||| ||||| ||| ||||||||||||| |||| |||| || |||| | ||||||| |
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|
| T |
1640610 |
tggtgccaatgagaaaagccttcaatggaacttttatagttgccggaggctattcgcgacaagatgggattgatgccatagttgaaaataagacagatct |
1640511 |
T |
|
| Q |
128 |
tgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctctcaataaatataacagggagacattctacact |
227 |
Q |
| |
|
||||| ||||||||| ||||| || | ||||||||||| || |||||||| || || | ||||||||||| || |||||| |||| ||||||||||| |
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|
| T |
1640510 |
tgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaacaagtataaccgggaaacattctacaca |
1640411 |
T |
|
| Q |
228 |
tctgatccggttgtaggttatacagactatccctttcttg |
267 |
Q |
| |
|
|||||||||||| | |||||||||||||| || ||||||| |
|
|
| T |
1640410 |
tctgatccggttctcggttatacagactacccttttcttg |
1640371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 65854 - 65937
Alignment:
| Q |
99 |
aatgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgca |
182 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
65854 |
aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 12121406 - 12121338
Alignment:
| Q |
114 |
aatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgca |
182 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
12121406 |
aataaggcagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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