View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7726_low_1 (Length: 1194)
Name: NF7726_low_1
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 33931691 - 33931151
Alignment:
| Q |
19 |
agaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggag |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931691 |
agaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaa |
33931592 |
T |
|
| Q |
119 |
gaaggtggagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33931591 |
gaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagagga |
33931492 |
T |
|
| Q |
219 |
tgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaatt |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931491 |
tgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaatt |
33931392 |
T |
|
| Q |
319 |
cacagtaatgatgcagtgatatgttatcttttgattcgtttatgtgtaaatatcttctgtagagtagatgagttgattttattgatttatttacatacaa |
418 |
Q |
| |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931391 |
cataacaatgatgcagtgatatgttatcttttgattcgtttatgtgtaaatatcttctgtagagtagatgagttgattttattgatttatttacatacaa |
33931292 |
T |
|
| Q |
419 |
aacaaattaataaaatttctgtgtataaacaaacttcttttatgctttgtaatttcttaatctgtatgagtacatgtgtttgtttttctttttaaaaaca |
518 |
Q |
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| T |
33931291 |
aacaaattaataaaatttctgtgtataaacaaacttcttttatgctttgtaatttcttaatctgtatgagtacatgtgtttgtttttcttttcaaaaaca |
33931192 |
T |
|
| Q |
519 |
aaacagttcttacttgttactcaataaggagagtaatggaa |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33931191 |
aaacagttcttacttgttactcaataaggagagtaatggaa |
33931151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 33938496 - 33938177
Alignment:
| Q |
19 |
agaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggag |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33938496 |
agaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaa |
33938397 |
T |
|
| Q |
119 |
gaaggtggagaggaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33938396 |
gaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagagga |
33938297 |
T |
|
| Q |
219 |
tgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaatt |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33938296 |
tgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaatt |
33938197 |
T |
|
| Q |
319 |
cacagtaatgatgcagtgat |
338 |
Q |
| |
|
|| | |||||||||||||| |
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|
| T |
33938196 |
cataacaatgatgcagtgat |
33938177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 548 - 819
Target Start/End: Complemental strand, 33931130 - 33930860
Alignment:
| Q |
548 |
agagtaatggaaaacatggagagtaaaagtgtctttactatggagagtaaaagggactacatgtggaagaaagaaaatagtttgtggagatcgaattttt |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931130 |
agagtaatggaaaacatggagagtaaaagtgtctttactatagagagtaaaagggactacatgtggaagaaagaaaatagtttgtggagatcgaattttt |
33931031 |
T |
|
| Q |
648 |
taaaaatctataggtttaaaaatagttgaaaattatataggtaaacatttagaataaatcttcaatttagtctctagtctgtcaattttatcccttaatt |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33931030 |
taaaaatctataggtttaaaaatagttgaaaattatataggtaaacatttagaataaatcttcaatttagtctctagtctgtcaattttattccttaatt |
33930931 |
T |
|
| Q |
748 |
atattaaaatccatcaaatttgttcataaccttttaacagtagagactaaattgacatattttatatagttt |
819 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
33930930 |
ata-taaaatccatcaaatttgttcataagcttttaatagtagagactaaactgacatattttatatagttt |
33930860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 956 - 1120
Target Start/End: Complemental strand, 33930774 - 33930621
Alignment:
| Q |
956 |
gtgaaagaatacgtgttatacactctctttcattttaggaagagggtcaaaagacaaaagaatgtgctaaatatcggcacatttcaacnnnnnnnnnnnn |
1055 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33930774 |
gtgaaagaatacgtgttatacactctctttcattttaggaagagggtcaaaagacaaaagaatgtgctaaatattggcacatttcaactttatttttt-- |
33930677 |
T |
|
| Q |
1056 |
nnnnnnnncaaaccatcgtccacatgctttgtaaaaaataatatcctcaagataatggggatcaa |
1120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
33930676 |
---------aaaccatcgtccacatgctttgtaaaaaataatatcctcaagataatccggatcaa |
33930621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1123 - 1178
Target Start/End: Complemental strand, 33930596 - 33930541
Alignment:
| Q |
1123 |
aaggttcattcaaggagttgacatctcaactattgactgcttgtctcacatgatgt |
1178 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
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|
| T |
33930596 |
aaggttcattcaaggagttgacatttcgactattgactgcttgtctcacataatgt |
33930541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 898
Target Start/End: Complemental strand, 33930865 - 33930831
Alignment:
| Q |
864 |
tagtttctgaactaaattatggtaaattcctcacc |
898 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
33930865 |
tagtttctgaactaaattatggtaaattcctcacc |
33930831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 31 - 337
Target Start/End: Complemental strand, 42840097 - 42839791
Alignment:
| Q |
31 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaggaaggtggagag |
130 |
Q |
| |
|
||||||||||| || || |||||||| ||| ||||||| ||||||||||| | |||||||||||||| || || || | ||||| ||| |||||| |
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|
| T |
42840097 |
attgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggatttgatagcgctaatggaatcagggggagag |
42839998 |
T |
|
| Q |
131 |
gaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
230 |
Q |
| |
|
||| |||| ||||| |||||||| ||||| ||||| ||||||||| ||| |||||| | |||||||| |||||||||||||||||| | || ||| |
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|
| T |
42839997 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaagagtttgaagaggatgttgaaaaagt |
42839898 |
T |
|
| Q |
231 |
tgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagtaatgat |
330 |
Q |
| |
|
|||| || |||||||| ||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||| || |||| | | ||||| |
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|
| T |
42839897 |
tgggggattctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagagttcagaatcatgat |
42839798 |
T |
|
| Q |
331 |
gcagtga |
337 |
Q |
| |
|
| ||||| |
|
|
| T |
42839797 |
ggagtga |
42839791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 31 - 320
Target Start/End: Complemental strand, 42846905 - 42846616
Alignment:
| Q |
31 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaggaaggtggagag |
130 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| ||||||| ||||||||||| | |||||||||| || || ||| | || ||||| ||| |||||| |
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|
| T |
42846905 |
attgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagatttgattacgttaatggaatcagggggagag |
42846806 |
T |
|
| Q |
131 |
gaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
230 |
Q |
| |
|
|| |||| ||||| |||||||| ||||| ||||| |||||||||| ||| ||||| || ||||| || || ||||||||||||||| | || || |
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|
| T |
42846805 |
gaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaaaagtttgaagaggatgttgaaaaaac |
42846706 |
T |
|
| Q |
231 |
tgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
320 |
Q |
| |
|
|||| || |||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42846705 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42846616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 31 - 320
Target Start/End: Complemental strand, 42849892 - 42849603
Alignment:
| Q |
31 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaggaaggtggagag |
130 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| ||||||| ||||||||||| | |||||||||||||| || || | ||||| ||| |||||| |
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|
| T |
42849892 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggtgatggattattgagtttggaggatttgataaagcttatggaatcagggggagag |
42849793 |
T |
|
| Q |
131 |
gaacaaaagttgaaagatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
230 |
Q |
| |
|
||| |||| ||||| |||||||| ||||| ||||| |||||||||| ||| ||||| || |||||||| || ||||||||||||||| | || || |
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|
| T |
42849792 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaaaaaac |
42849693 |
T |
|
| Q |
231 |
tgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
320 |
Q |
| |
|
|||| || |||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42849692 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42849603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 789 - 827
Target Start/End: Complemental strand, 18044147 - 18044109
Alignment:
| Q |
789 |
agagactaaattgacatattttatatagtttaaagatta |
827 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
18044147 |
agagactaaattgacaaattttatatattttaaagatta |
18044109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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