View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_11 (Length: 432)
Name: NF7726_low_11
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 3811428 - 3811842
Alignment:
| Q |
1 |
acgattctattgctctagcctcgaactttaagttgtactgaaaagaatgagggcgagttgatttggatattgaatcttctcgagtgtaattggttttaga |
100 |
Q |
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| T |
3811428 |
acgattttattgctctagcctcgaactt-aagttgtactgaaaagaatgagggcgagttgatttggatattgaatcttctcgagtgtaattggttttaga |
3811526 |
T |
|
| Q |
101 |
cggctctagaattgattataatttgaagttataatttacaatatttgtcaataaaattgtttagaattgatgaacattttcaaccaatatcagttggata |
200 |
Q |
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| T |
3811527 |
ccgctctaaaattgattataatttgaagttataatttacaatatttgtcaataaaattgtttagaattgatgaacattttcaaccaataacagttggata |
3811626 |
T |
|
| Q |
201 |
atatggtaagatgttggagagaaaatttctatcaagctatagcccaagtgcataaccataatataagnnnnnnngacaaaaatagctcacaaattgtgat |
300 |
Q |
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| T |
3811627 |
agatggtaagatgttggagacaaaatttctatcaagctatagcccaagtgcataaccataatataagaaaaaaagacaaaaatagctcacaaattgtgat |
3811726 |
T |
|
| Q |
301 |
tcgtcacttcatgcttatatctcctctactttcttgacatacaactacctcaagtccctcaagagactagagatattatggtgaagaaaacttaagtaat |
400 |
Q |
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| T |
3811727 |
tcgtcacttcatgcttatatctcctctactttcttgacatacaactacctcaagtccctcaagagactagagatattatggtgaagaaaacttaagtaat |
3811826 |
T |
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| Q |
401 |
tttttacatttatact |
416 |
Q |
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| T |
3811827 |
tttttacatttatact |
3811842 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 22271423 - 22271463
Alignment:
| Q |
107 |
tagaattgattataatttgaagttataatttacaatatttg |
147 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
22271423 |
tagaattgattttaaattgaagttataatttacaatttttg |
22271463 |
T |
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