View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7726_low_12 (Length: 406)
Name: NF7726_low_12
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 16723503 - 16723125
Alignment:
| Q |
19 |
ggaggctcttaagactaagatct--gagtcaaatatgcagctgttctcaagtttatgcacaatactgaaaatactcggtcacaagagataaatgatgata |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16723503 |
ggaggctcttaagactaagatctctgagtcaaatatgcagctgttctcaagtttatgcacaatactgaaaatactcggtcacaagagataaatgatgata |
16723404 |
T |
|
| Q |
117 |
acaaaatgcagctatggagatatgactagatgagaacaaaagcgggtaaaaatgcataccaggggataaacctcttcgatggatgttccaggctttatag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16723403 |
acaaaatgcagctatggagatatgactagatgagaacaaaagcgggtaaaaatgcataccaggggataaacctcttcgacggatgttccaggctttatag |
16723304 |
T |
|
| Q |
217 |
atacacccggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaatcactttcatgaaagtaatataaaatgtgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16723303 |
atacacccggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaatcactttcatgaaagtaatataaaatgtgg |
16723204 |
T |
|
| Q |
317 |
gcagaagaaagagagaaaaaatacgagaaaacaacggataacatgaaggaaaagtgttaaggcgaaccttttgatgtcc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16723203 |
gcagaagaaagagagaaaaaatacgagaaaacaacggataacatgaaggaaaagtgttaaggcgaaccttttgatgtcc |
16723125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 301
Target Start/End: Complemental strand, 10695611 - 10695332
Alignment:
| Q |
25 |
tcttaagactaagatct--gagtcaaatatgcagctgttctcaagtttatgcacaata--ctgaaaatactcggtcacaagagataaatgatgataacaa |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||||||||||||||||||| | || || |||||| |||||| |||||||||||||||||||| |
|
|
| T |
10695611 |
tcttaagactaagatctctgagtcaaatatgtatctgttctcaagtttatgcacaaaagactcaagatactctgtcacaggagataaatgatgataacaa |
10695512 |
T |
|
| Q |
121 |
aatgcagctatggagatatgactagatgagaacaaaagcgggtaaaaatgcataccaggggataaacctcttcgatggatgttccaggctttatagatac |
220 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
10695511 |
aatgcagctatgcaggtatgaccagatgagaacaatagcggg-aaaaatgcataccaggggataaacctcttcgacggatgttccaggctttatcgatac |
10695413 |
T |
|
| Q |
221 |
acccggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaatcactttcatgaaag |
301 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
10695412 |
accaggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaattactttcaagaaag |
10695332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 10695277 - 10695218
Alignment:
| Q |
332 |
aaaaaatacgagaaaacaacggataacatgaaggaaaagtgttaaggcgaaccttttgatgtc |
394 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
10695277 |
aaaaaatacgagaaaaca---gacaacatgaaggaaaagtgtcaagaccaaccttttgatgtc |
10695218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University