View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_13 (Length: 371)
Name: NF7726_low_13
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 13224907 - 13224556
Alignment:
| Q |
1 |
agtacttgagattagacaacattgttaattccactggtattgttcctgagtacgagttgtatccgatttccaagcgttgcaactctgataataagcctag |
100 |
Q |
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| T |
13224907 |
agtacttgagattagacaacattgttaattccactggtattgctcctgagtaggagttgtatccgatttccaagcgttgtaactctgataataagcctag |
13224808 |
T |
|
| Q |
101 |
ttgaggtggtagtgaaccttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactgaagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13224807 |
ttgaggtggtagtgaaccttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactgaagtag |
13224708 |
T |
|
| Q |
201 |
cttccaccgaggttaaggtgttctagaaaaggtagcctgataaattcttcggggagagggcctacgaaactgttactgtaagcattgaagactcttaaga |
300 |
Q |
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| T |
13224707 |
cttccaccgaggttaaggtgttctaaaaaaggtagcctgataaattcttcggggagagggcctacgaaactgttactgtaagcattgaagactcttaaga |
13224608 |
T |
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| Q |
301 |
atctaagctttgaaattccaggtgggaaagttgagttgaatgagttatggct |
352 |
Q |
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| T |
13224607 |
atctaagctttgaaattccaggtgggaaagttgagttgaatgagttatggct |
13224556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 13148881 - 13149220
Alignment:
| Q |
16 |
acaacattgttaattccactggtattgttcctgagtacgagttgtatccgatttccaagcgttgcaactctgataataagcctagttgaggtggtagtga |
115 |
Q |
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| T |
13148881 |
acaacattgttagttcaactggtagtgttcctgaatatgtgttgtatccaatttctaaatgttgtagctctgataataagcctagttcaggtggtagtgt |
13148980 |
T |
|
| Q |
116 |
accttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactgaagtagcttccaccgaggtta |
215 |
Q |
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| T |
13148981 |
gccttccaatgcattaccagctaaatctaggaacttgagtcttttgaaatttccatagcttggtgggattcttccattgaagtagcttccaccaaggctg |
13149080 |
T |
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| Q |
216 |
aggtgttctagaaaaggtagcctgataaattcttcggggagagggcctacgaaactgttactgtaagcattgaagactcttaagaatctaagctttgaaa |
315 |
Q |
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|| | ||||||||| || |||||||| | |||||| || |||||||| ||||||||| ||||| ||||| ||| |||||| ||| | | ||| |||| |
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| T |
13149081 |
agcttttctagaaatggaagcctgattagttcttcaggaagagggccagtgaaactgttgctgtatgcattaaaggttcttaaaaatattaacttcgaaa |
13149180 |
T |
|
| Q |
316 |
ttccaggtgggaaagttgagttgaatgagttatggctaat |
355 |
Q |
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| T |
13149181 |
ttccaggtggaaaagttgagttgaaagagttatggctaat |
13149220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 13315461 - 13315812
Alignment:
| Q |
1 |
agtacttgagattagacaacattgttaattccactggtattgttcctgagtacgagttgtatccgatttccaagcgttgcaactctgataataagcctag |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||| |||||||| ||||||||||||||||||| ||||| |
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| T |
13315461 |
agtatttgagattagacaacatcgttaattccactggtagtgttcctgaaaatttgttgtatccaatttccaaatgttgcaactctgataataaccctag |
13315560 |
T |
|
| Q |
101 |
ttgaggtggtagtgaaccttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactgaagtag |
200 |
Q |
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|| |||||||| ||||||||||||||||||||||| ||||| || || || ||||||| || ||||||||||| |||||| ||||| |||| ||| |
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| T |
13315561 |
ttcaggtggtacagaaccttccaatgcattaccagctaaatagaggaactttagtctttcaaagtttccataacttgctgggattgtgccattgaaatag |
13315660 |
T |
|
| Q |
201 |
cttccaccgaggttaaggtgttctagaaaaggtagcctgataaattcttcggggagagggcctacgaaactgttactgtaagcattgaagactcttaaga |
300 |
Q |
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|| |||| ||||| || | |||||||| || | | | | | |||||| || |||||||||| ||| | || || |||||||| |||| |||||||| |
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| T |
13315661 |
ctctcaccaaggttgagcttctctagaaatggaaatccggtgagttcttcaggaagagggcctatgaagttattgctataagcattaaagattcttaaga |
13315760 |
T |
|
| Q |
301 |
atctaagctttgaaattccaggtgggaaagttgagttgaatgagttatggct |
352 |
Q |
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|||| || ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13315761 |
atcttagttttgaaattccctttgggaaagttgagttgaatgagttatggct |
13315812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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