View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_14 (Length: 349)
Name: NF7726_low_14
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 13225238 - 13224896
Alignment:
| Q |
7 |
tttggtggtaatggaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggtcaccaatttcttgtggaatttcaccttttagcttgt |
106 |
Q |
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| T |
13225238 |
tttggtggtaatgcaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggtcaccaatttcttgtggaatttcaccttttagcttgt |
13225139 |
T |
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| Q |
107 |
tatacatgagcctcaaatctactatctccttcaacattgttatttctgatggaatcgaaccagtgagttcattttccgataaatcaagagcttgcaatga |
206 |
Q |
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| T |
13225138 |
tatacatgagcctcaaatctactatctccttcaacattgttatttctgatggaatcgaaccagtgagttcattttccgataaatcaagagcttgcaatga |
13225039 |
T |
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| Q |
207 |
tttcaactttcctatgcttgatgggatttcaccatgtaaatgattcttaaagagaagcagtgtttcaagcatgcataagttacctagttcaggaatcact |
306 |
Q |
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| T |
13225038 |
tttcaactttcctatgcttgatgggatttcaccatgtaaatgatttttgaagagaagcagtgtttcaagcatggataagttacctagttcaggaatcact |
13224939 |
T |
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| Q |
307 |
tgaccagaaatgttggcaccagagatatccaagtacttgagat |
349 |
Q |
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| T |
13224938 |
tgaccagaaatgttggcacctgagatatccaagtacttgagat |
13224896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 13148535 - 13148851
Alignment:
| Q |
7 |
tttggtggtaatggaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggtcaccaatttcttgtggaatttcaccttttagcttgt |
106 |
Q |
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| T |
13148535 |
tttggtggtagtgtacctctgagtgagttgttgaaaacttggaaagtgttaagttttgagagttcactaatttcttgtggaatttcacctcttagtttgt |
13148634 |
T |
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| Q |
107 |
tatacatgagcctcaaatctactatctccttcaacattgttatttctgatggaatcgaaccagtgagttcattttccgataaatcaagagcttgcaatga |
206 |
Q |
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| T |
13148635 |
tatccatcagatgcaaaattgttagttcctttaacattgttatttctgatggaattgaacccgtgagtttattttctgataaatcaatagcttttaggga |
13148734 |
T |
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| Q |
207 |
tttcaactttcctatgcttgatgggatttcaccatgtaaatgattcttaaagagaagcagtgtttcaagcatgcataagttacctagttcaggaatcact |
306 |
Q |
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| T |
13148735 |
tttcaacttgcctatgcttgatgggatttcaccacttaagtgattcttgaaaagaagcagtgtttcaagcatggttaagtttcctagttcaggaatcact |
13148834 |
T |
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| Q |
307 |
tgaccagaaatgttggc |
323 |
Q |
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| T |
13148835 |
agaccagaaatgttggc |
13148851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 322
Target Start/End: Original strand, 13315157 - 13315445
Alignment:
| Q |
34 |
ttgttgaaaatatggaaagtgttgagttttggaaggtcaccaatttcttgtggaatttcaccttttagcttgttatacatgagcctcaaatctactatct |
133 |
Q |
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| T |
13315157 |
ttgttgaaaacttggaaagtgttgagttttggaagctcaccaattccttgtggaatttcaccttttagcttgtttagcatgagattcatccatcttaatt |
13315256 |
T |
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| Q |
134 |
ccttcaacattgttatttctgatggaatcgaaccagtgagttcattttccgataaatcaagagcttgcaatgatttcaactttcctatgcttgatgggat |
233 |
Q |
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|||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||| | ||||| ||||| |||||| |||||||||| |
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| T |
13315257 |
ccttcagcattgttatttctgatggaattgaaccagttagttcattatccgataaatcaagatgttgtagtgattccaactggcctatgtttgatgggat |
13315356 |
T |
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| Q |
234 |
ttcaccatgtaaatgattcttaaagagaagcagtgtttcaagcatgcataagttacctagttcaggaatcacttgaccagaaatgttgg |
322 |
Q |
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| T |
13315357 |
ttcgccgcttaagcgattcttggagatatacaacttttcaagcatggttaagtttcctagctcaggaatcacttgaccagaaatattgg |
13315445 |
T |
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