View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_15 (Length: 344)
Name: NF7726_low_15
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 52290809 - 52290480
Alignment:
| Q |
1 |
ataaagagacaattattattatacggagagagtatgtaactggtccaccaaattcacggtcatttggaatagagcctcttgaattgaatgaccccttctt |
100 |
Q |
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| T |
52290809 |
ataaagagacaattattattatacggagggagtatgtaactgatcaaccaaattcacggtcatttcgaatagagcctcttgaattgaatgaccccttg-- |
52290712 |
T |
|
| Q |
101 |
cagatacgaatcacacattcactcactcggattcagtcattct----atatatcaccttggtcctactttcttttgtccttattatttccttgccggcct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52290711 |
-agatacgaatcacacattcactcactcggattcagtcattctttctatatatcaccttggtcctactttcttttgtccttattatttccttgccggcct |
52290613 |
T |
|
| Q |
197 |
taaattaatttcttacattgcatttcccattataaataacaccacattaacttttaattatattgcaccacatcaattttctttcttatagtttcacagc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52290612 |
taaattaatttcttacattgcatttcccattataaataacaccacattaacttttaattatattgcaccacatcaattttctttcttatagtttcacagc |
52290513 |
T |
|
| Q |
297 |
cacactatgtctaaacgctttaagatgaaattt |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
52290512 |
cacactatgtctaaacgctttaagatgaaattt |
52290480 |
T |
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