View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_18 (Length: 323)
Name: NF7726_low_18
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 8615664 - 8615365
Alignment:
| Q |
7 |
atgagatggacatcaatccaaccttccaacccttcttccaaaaactacatatttttctccaaactaatgtcctctttcnnnnnnncaaccttttttctaa |
106 |
Q |
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||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
8615664 |
atgagatcaacatcaaaccaaccctccaacccttcttccaaaaactacttatttttctccaaactaatgtcctctttcaaaaaaactaccttttttctaa |
8615565 |
T |
|
| Q |
107 |
ccttattcattgtccatgtctcttcttcttgtaaccaacttgacaaagattctctcttatctttctcttcaaatttctcaactttttcacctcacctacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8615564 |
ccttattcattgtccatgtctcttcttcttgtaaccaacttgacaaagattctctcttatctttctcttcaaatttctcatctttttcacctcacctacc |
8615465 |
T |
|
| Q |
207 |
acctcttaactggtcttcttccattgattgttgcagttgggaaggtataacttgtgatcaaaataatcaccatgttacacatcttttcttaccttctaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8615464 |
acctcttaactggtcttcttccattgattgttgcagttgggaaggtataacttgtgatcaaaataatcaccatgttacacatcttttcttaccttctaga |
8615365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 38982946 - 38982852
Alignment:
| Q |
101 |
ttctaaccttattcattgtccatgtctcttcttcttgtaaccaacttgacaaagattctctcttatctttctcttcaaatttctcaactttttcacctc |
199 |
Q |
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|||| |||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||| |
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| T |
38982946 |
ttctcaccttattcattgtccat--ctcttcttctagtaatgaacttgacaaagattcactcttatctctctcttaaaa--tctcaactttttcacctc |
38982852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 41261611 - 41261574
Alignment:
| Q |
101 |
ttctaaccttattcattgtccatgtctcttcttcttgt |
138 |
Q |
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| T |
41261611 |
ttctaaccttattaattgcccatgtctcttcttcttgt |
41261574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 46097639 - 46097584
Alignment:
| Q |
101 |
ttctaaccttattcattgtccatgtctcttcttcttgtaaccaacttgacaaagattc |
158 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
46097639 |
ttctcaccgtattcattgtccat--ctcttcttcttgtaatgaacttgacaaagattc |
46097584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 12201705 - 12201742
Alignment:
| Q |
101 |
ttctaaccttattcattgtccatgtctcttcttcttgt |
138 |
Q |
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||||||||||||| |||| ||||||||||||||||||| |
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| T |
12201705 |
ttctaaccttattaattgcccatgtctcttcttcttgt |
12201742 |
T |
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