View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7726_low_2 (Length: 700)

Name: NF7726_low_2
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7726_low_2
NF7726_low_2
[»] chr2 (1 HSPs)
chr2 (19-683)||(18319615-18320279)


Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 683
Target Start/End: Complemental strand, 18320279 - 18319615
Alignment:
Q  19 cccgcattaaaatattgatagtataagtaaccggacaataccttaaccgaacaagctcccaaaacaaatcaacagcctccctcgctttattctttctaat 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18320279 cccgcattaaaatattgatggtataagtaaccggacaataccttaaccgaacaagctcccaaaacaaatcaacagcctccctcgctttattctttataat 18320180  T
Q  119 caaaatattaaacaaatcattgtaaacaacaacattaaccccaacattattacactgaacatcaacaagcaactctttcgaaacatcgaatctaccgatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  18320179 caaaatattaaacaaatcattgtaaacaacaacattaaccccaacattattacactgaacatcaacaagcaactcttttgaaacatcgaatctaccaatc 18320080  T
Q  219 aaagcataggacgaaaccaaaaaccctaacaaccaactatcaggaacctgcccatcaaatctcatccaatcataaaccaatttcgcggaacgatgatgat 318  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18320079 aaagcatacgacgaaaccaaaaaccctaacaaccaactatcaggaacctgcccatcaaatctcatccaatcgtaaaccaatttcgcggaacgatgatgat 18319980  T
Q  319 tcgtttcacaaagcgatctcaaaagcatattataagtccaataattatgattcatatgcaatttctctttagtaaattcaacaaccctaaaacctaacaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18319979 tcgtttcacaaagcgatctcaaaagcatattataagtccaataattatgattcatatgcaatttctctttagtgaattcaacaaccctaaaacctaacaa 18319880  T
Q  419 aggagttttgttaaacctagaattaacaatctcttgaacgagatttggagttaaatgtttgctaaaataaaaaatgaaacggtcgaatgaagtgtaacga 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18319879 aggagttttgttaaacctagaattaacaatctcttgaacgagatttggagttaaatgtttactaaaataaaaaatgaaacggtcgaatgaagtgtaacga 18319780  T
Q  519 acgaaaacggttgaagcgagtttgacgaaccaggcgtcagctcttctgatggtacccattgtgggaacggcggcatcggagagtgtcacgtgccgaggaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  18319779 acgaaaacggttgaagcgagtttgacgaaccaggcgtcagctcttctaatgggacccattgtgggaagggcggcatcggagagtgtcacgtgccgaggaa 18319680  T
Q  619 cagcattggtggtggaagcacgtgcgggatggttgagatttgagtcacgaggttgatgatccatt 683  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18319679 cagcattcgtggtggaagcacgtgcgggatggttgagatttgaatcacgaggttgatgatccatt 18319615  T

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