View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7726_low_20 (Length: 280)

Name: NF7726_low_20
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7726_low_20
NF7726_low_20
[»] chr2 (1 HSPs)
chr2 (3-263)||(8310091-8310352)
[»] chr7 (2 HSPs)
chr7 (13-83)||(14583478-14583548)
chr7 (13-83)||(15997377-15997447)
[»] chr6 (2 HSPs)
chr6 (1-83)||(14813443-14813525)
chr6 (13-83)||(26968246-26968316)
[»] chr8 (1 HSPs)
chr8 (1-83)||(188367-188449)
[»] chr4 (4 HSPs)
chr4 (1-83)||(5237985-5238067)
chr4 (1-83)||(10636767-10636849)
chr4 (1-62)||(23169027-23169088)
chr4 (1-64)||(22178511-22178574)
[»] chr1 (2 HSPs)
chr1 (1-83)||(2358375-2358457)
chr1 (1-64)||(52776328-52776391)
[»] scaffold0329 (1 HSPs)
scaffold0329 (1-64)||(9657-9720)
[»] chr3 (2 HSPs)
chr3 (1-64)||(12283948-12284011)
chr3 (8-83)||(49728071-49728146)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 8310091 - 8310352
Alignment:
Q  3 ggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaatagaaaataagaaataaag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||| ||||||||||||||||    
T  8310091 ggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgtcgtgcagcctctaaagttgccaataaaaaataagaaataaag 8310190  T
Q  103 ataactattccaccaactcttaactaactac-atatatccaatagaacatttgctcaatatacaaagaatgctggataaatttattagcaatcatgtgat 201  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8310191 ataactattccaccaactcttaactaactactatatatgcaatagaacatttgctcaatatacaaagaatgctggataaatttatttgcaatcatgtgat 8310290  T
Q  202 ttccttcatttttattctgaaacacagcctcgttctgaatctttcaaatttgtacaagatat 263  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  8310291 ttccttcatttttattctgaaacacagcctcgttctgaatcattcaaatttgcacaagatat 8310352  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 14583478 - 14583548
Alignment:
Q  13 tcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14583478 tcttcacatagaccaatccctaattgtgcttgtgttcatccatgtcgttgtgcatcatctaaagttgctaa 14583548  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 15997377 - 15997447
Alignment:
Q  13 tcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    |||||||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15997377 tcttcacacagaccaatttctaattgtgcttgtgttcatccatgtcgttgtgcagcatctaaagttgctaa 15997447  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14813443 - 14813525
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  14813443 tgggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaa 14813525  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 26968246 - 26968316
Alignment:
Q  13 tcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    ||||||||||||||||| |||| |||||  ||||||||||| |||||||||| | || ||| |||||||||    
T  26968246 tcttcacatagacctattcctacttgtgtatgtgttcatccttgtcgttgtgaagcaactagagttgctaa 26968316  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 188367 - 188449
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||  |||||| |||||||||    
T  188367 tgggaggagttatcttcacatagacctatccctaattgtgcctatgttcatccttgtcgttgtgctgcatctagagttgctaa 188449  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5237985 - 5238067
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  5237985 tgggaggaattatcttcacatagacatatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaa 5238067  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10636767 - 10636849
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||||| |||||||||    
T  10636767 tgggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctagagttgctaa 10636849  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23169088 - 23169027
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttg 62  Q
    |||||||| ||||||||||| |||||||| ||||||||||  ||||| |||| |||||||||    
T  23169088 tgggaggaattatcttcacacagacctattcctaattgtgtatgtgtccatcaatgtcgttg 23169027  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22178574 - 22178511
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtg 64  Q
    ||||| |||||| |||| || |||||||||||||||||| ||||  ||||||| ||||||||||    
T  22178574 tgggaagagttagcttctcacagacctatccctaattgttcttgcattcatccttgtcgttgtg 22178511  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2358375 - 2358457
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||  ||||||||||||||||    
T  2358375 tgggaggaattatcttcacatagacctatccctaattgttcttgtattcatccttgtcgttgtgctgcatctaaagttgctaa 2358457  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52776328 - 52776391
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtg 64  Q
    ||||| |||||| |||| || |||||||||||||||||| ||||  ||||||| ||||||||||    
T  52776328 tgggaagagttagcttctcacagacctatccctaattgttcttgcattcatccttgtcgttgtg 52776391  T

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Target: scaffold0329 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9657 - 9720
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtg 64  Q
    ||||| |||||| |||| || |||||||||||||||||| ||||  ||||||| ||||||||||    
T  9657 tgggaagagttagcttctcacagacctatccctaattgttcttgcattcatccttgtcgttgtg 9720  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12283948 - 12284011
Alignment:
Q  1 tgggaggagttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtg 64  Q
    ||||| |||||| |||| || |||||||||||||||||| ||||  ||||||| ||||||||||    
T  12283948 tgggaagagttagcttctcacagacctatccctaattgttcttgcattcatccttgtcgttgtg 12284011  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 49728146 - 49728071
Alignment:
Q  8 agttatcttcacatagacctatccctaattgtgcttgtgttcatccatgtcgttgtgcaacatctaaagttgctaa 83  Q
    ||||||||||||||||||| || || |||||| ||||| ||||||| || |||||||   |||||| |||||||||    
T  49728146 agttatcttcacatagaccaattcccaattgttcttgtattcatccttgccgttgtgttgcatctagagttgctaa 49728071  T

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