View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_21 (Length: 244)
Name: NF7726_low_21
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 1396079 - 1396257
Alignment:
| Q |
17 |
atagaaatacatattctattgatcacataaaaacacacaaattttgtcatagtcataaagaaatgcatattctattgatccaataaaaacacacaagttt |
116 |
Q |
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| T |
1396079 |
atagaaatacatattctattgatcacataaaaacacacaaattttgtcatagtcataaagaaatgcatattctattaatccaataaaaacacacaagttt |
1396178 |
T |
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| Q |
117 |
tgctgcataactaaattttcatctcaatgagccagtaacaatttggtaatttgtttcactttataattgataattaaga |
195 |
Q |
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| T |
1396179 |
tgctgcataactaaattttcatctcaatgagccagtaacaatttggtaatttgtttcactttataattgataattaaga |
1396257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 1390790 - 1390964
Alignment:
| Q |
19 |
agaaatacatattctattgatcacataaaaacacacaaattttgtcatagtcataaagaaatgcatattctattgatccaataaaaacacacaagttttg |
118 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||| || |||||||||||||||||||| |
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| T |
1390790 |
agaagtacatattctattgatcacataaaaactcacaaattttgtcatagtcataaaaatatg--tattctattgaacccataaaaacacacaagttttg |
1390887 |
T |
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| Q |
119 |
ctgcataactaaattttcatctcaatgagccagtaacaatttggtaatttgtttcactttataattgataattaaga |
195 |
Q |
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| T |
1390888 |
ctgcatagctaaattttcatcttaatgagctggtaacaatttggtaatttgtgtcactgtatagttgataactaaga |
1390964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 1363519 - 1363561
Alignment:
| Q |
21 |
aaatacatattctattgatcacataaaaacacacaaattttgt |
63 |
Q |
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| T |
1363519 |
aaatacatattttattgatcacataaaaacacaataattttgt |
1363561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 1363612 - 1363648
Alignment:
| Q |
85 |
attctattgatccaataaaaacacacaagttttgctg |
121 |
Q |
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| T |
1363612 |
attctatcgatcccataaaaacacacaagttttgctg |
1363648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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